Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5F94_RS10790 Genome accession   NZ_CP145074
Coordinates   2062681..2062998 (-) Length   105 a.a.
NCBI ID   WP_003697861.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_I_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2057681..2067998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F94_RS10760 (V5F94_10800) - 2057952..2058110 (+) 159 WP_154235844.1 hypothetical protein -
  V5F94_RS10765 (V5F94_10805) - 2058084..2058773 (-) 690 WP_353425693.1 opacity family porin -
  V5F94_RS10770 (V5F94_10810) - 2059402..2059919 (-) 518 Protein_2082 pilin -
  V5F94_RS10775 (V5F94_10815) pilE 2060290..2060781 (-) 492 WP_353425694.1 pilin Machinery gene
  V5F94_RS10780 (V5F94_10820) lpxC 2060888..2061811 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5F94_RS10785 (V5F94_10825) - 2062386..2062742 (-) 357 Protein_2085 pilin -
  V5F94_RS10790 (V5F94_10830) pilE 2062681..2062998 (-) 318 WP_003697861.1 pilin Machinery gene
  V5F94_RS10795 (V5F94_10835) - 2063370..2063501 (-) 132 WP_012504086.1 hypothetical protein -
  V5F94_RS10800 (V5F94_10840) - 2063583..2064272 (-) 690 WP_003687013.1 SprT family zinc-dependent metalloprotease -
  V5F94_RS10805 (V5F94_10845) - 2064269..2065012 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  V5F94_RS10810 (V5F94_10850) gmhB 2065042..2065605 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  V5F94_RS10815 (V5F94_10855) - 2065748..2067400 (+) 1653 WP_003690371.1 LTA synthase family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11639.16 Da        Isoelectric Point: 10.3830

>NTDB_id=936922 V5F94_RS10790 WP_003697861.1 2062681..2062998(-) (pilE) [Neisseria gonorrhoeae strain WHO_I_2024]
MASTGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVKRESNNADAVTADGTDGANGTKIETKHLPSTCRDESSAGCIETPRA
DFKHFQKISRYRILPESRQMAGKQR

Nucleotide


Download         Length: 318 bp        

>NTDB_id=936922 V5F94_RS10790 WP_003697861.1 2062681..2062998(-) (pilE) [Neisseria gonorrhoeae strain WHO_I_2024]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGAAAGCAACAACGCCGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACG
GCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCC
GATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.611

68.571

0.505
  pilE Neisseria gonorrhoeae MS11

60.563

67.619

0.41