Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8620_RS06000 Genome accession   NZ_AP028369
Coordinates   1155789..1156283 (+) Length   164 a.a.
NCBI ID   WP_052804542.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10666     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1150789..1161283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8620_RS05985 (B10666_11880) - 1152175..1153353 (-) 1179 WP_052804540.1 metal-dependent hydrolase -
  R8620_RS05990 (B10666_11890) gpsA 1153363..1154259 (-) 897 WP_079460664.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8620_RS05995 (B10666_11900) gatB 1154256..1155674 (-) 1419 WP_002856133.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8620_RS06000 (B10666_11910) luxS 1155789..1156283 (+) 495 WP_052804542.1 S-ribosylhomocysteine lyase Regulator
  R8620_RS06005 (B10666_11920) - 1156594..1157586 (+) 993 WP_002882217.1 isopenicillin N synthase family dioxygenase -
  R8620_RS06010 (B10666_11930) - 1157597..1158367 (+) 771 WP_002882216.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8620_RS06015 (B10666_11940) metE 1158379..1160643 (+) 2265 WP_052804543.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18240.15 Da        Isoelectric Point: 5.9947

>NTDB_id=93686 R8620_RS06000 WP_052804542.1 1155789..1156283(+) (luxS) [Campylobacter jejuni strain BCH-10666]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCVPNKDIMSEKGTHTLEHLFAGFMRDHLNSDSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIINNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=93686 R8620_RS06000 WP_052804542.1 1155789..1156283(+) (luxS) [Campylobacter jejuni strain BCH-10666]
ATGCCATTATTAGATAGTTTTAAAGTTGATCATACCAAAATGCCAGCGCCCGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGTGTATTTGATTTGCGTTTTTGCGTACCAAATAAAGACATTATGAGCGAAAAAGGTACAC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAGATTCGGTTGAAATCATTGATATTTCACCT
ATGGGCTGTCGTACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGTGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATAAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment