Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   V5G11_RS02670 Genome accession   NZ_CP145071
Coordinates   522722..523330 (+) Length   202 a.a.
NCBI ID   WP_003690900.1    Uniprot ID   A0AB74EBN2
Organism   Neisseria gonorrhoeae strain WHO_J_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 517722..528330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G11_RS02645 (V5G11_02645) - 518047..518628 (-) 582 WP_047923823.1 superoxide dismutase -
  V5G11_RS02650 (V5G11_02650) dnaB 518792..520198 (+) 1407 WP_003704337.1 replicative DNA helicase -
  V5G11_RS02655 (V5G11_02655) pilH 520506..521171 (+) 666 WP_353403740.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G11_RS02660 (V5G11_02660) pilI 521203..521811 (+) 609 WP_263955095.1 type IV pilus modification protein PilV Machinery gene
  V5G11_RS02665 (V5G11_02665) pilJ 521808..522743 (+) 936 WP_010357463.1 PilW family protein Machinery gene
  V5G11_RS02670 (V5G11_02670) pilK 522722..523330 (+) 609 WP_003690900.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G11_RS02675 (V5G11_02675) pilL 523332..523805 (+) 474 WP_353403742.1 PilX family type IV pilin Machinery gene
  V5G11_RS02680 (V5G11_02680) - 523875..524183 (-) 309 WP_010951048.1 AzlD family protein -
  V5G11_RS02685 (V5G11_02685) - 524180..524887 (-) 708 Protein_520 AzlC family ABC transporter permease -
  V5G11_RS02690 (V5G11_02690) dut 525053..525505 (+) 453 WP_003687923.1 dUTP diphosphatase -
  V5G11_RS02695 (V5G11_02695) dapC 525583..526770 (+) 1188 WP_353403649.1 succinyldiaminopimelate transaminase -
  V5G11_RS02700 (V5G11_02700) yaaA 526926..527705 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22023.05 Da        Isoelectric Point: 7.5810

>NTDB_id=936843 V5G11_RS02670 WP_003690900.1 522722..523330(+) (pilK) [Neisseria gonorrhoeae strain WHO_J_2024]
MRKQNALTGIPTSEGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNDANEETFDNIVVKGKPTVEAVKRPCPAKSGKNSAGLCIDNKGMEYNKGVAGVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=936843 V5G11_RS02670 WP_003690900.1 522722..523330(+) (pilK) [Neisseria gonorrhoeae strain WHO_J_2024]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGAGGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGATGCTAATGA
AGAGACTTTTGACAATATCGTGGTGAAAGGCAAGCCTACCGTTGAGGCCGTGAAGCGTCCTTGCCCTGCAAAGTCTGGCA
AAAATTCTGCCGGTCTGTGCATTGACAATAAAGGGATGGAATATAATAAAGGCGTGGCAGGCGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

89.163

100

0.896