Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   V5G11_RS02655 Genome accession   NZ_CP145071
Coordinates   520506..521171 (+) Length   221 a.a.
NCBI ID   WP_353403740.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_J_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515506..526171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G11_RS02630 (V5G11_02630) cysT 515631..516460 (-) 830 Protein_509 sulfate ABC transporter permease subunit CysT -
  V5G11_RS02635 (V5G11_02635) - 516646..516978 (+) 333 WP_003687908.1 hypothetical protein -
  V5G11_RS02640 (V5G11_02640) - 517308..517817 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5G11_RS02645 (V5G11_02645) - 518047..518628 (-) 582 WP_047923823.1 superoxide dismutase -
  V5G11_RS02650 (V5G11_02650) dnaB 518792..520198 (+) 1407 WP_003704337.1 replicative DNA helicase -
  V5G11_RS02655 (V5G11_02655) pilH 520506..521171 (+) 666 WP_353403740.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G11_RS02660 (V5G11_02660) pilI 521203..521811 (+) 609 WP_263955095.1 type IV pilus modification protein PilV Machinery gene
  V5G11_RS02665 (V5G11_02665) pilJ 521808..522743 (+) 936 WP_010357463.1 PilW family protein Machinery gene
  V5G11_RS02670 (V5G11_02670) pilK 522722..523330 (+) 609 WP_003690900.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G11_RS02675 (V5G11_02675) pilL 523332..523805 (+) 474 WP_353403742.1 PilX family type IV pilin Machinery gene
  V5G11_RS02680 (V5G11_02680) - 523875..524183 (-) 309 WP_010951048.1 AzlD family protein -
  V5G11_RS02685 (V5G11_02685) - 524180..524887 (-) 708 Protein_520 AzlC family ABC transporter permease -
  V5G11_RS02690 (V5G11_02690) dut 525053..525505 (+) 453 WP_003687923.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24623.09 Da        Isoelectric Point: 9.4066

>NTDB_id=936840 V5G11_RS02655 WP_353403740.1 520506..521171(+) (pilH) [Neisseria gonorrhoeae strain WHO_J_2024]
MCTRKQQGFTLIELLIVIAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDLGKKEQGMLAFGDKNDNKAYDGDSADVFLRNVVLNDDIKDKRINYTFNHIAFGQTRPTADRVVWTFNQNGTFGYSS
DRNLKNNSKFVYSDGYIQIVLTDAKAVSAGEKKFRSAVVLIDSSGRVEVCPRNDRRAVCQH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=936840 V5G11_RS02655 WP_353403740.1 520506..521171(+) (pilH) [Neisseria gonorrhoeae strain WHO_J_2024]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAATAGAGCTGCTCATCGTGATAGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTGGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGTGA
TTCTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTCAAACACGGCCGACTGCCGATCGTGTTGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTCGTCC
GATCGGAATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGTTGACAGATGCGAAGGCGGT
TTCTGCCGGTGAAAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGAAACG
ATAGGCGTGCCGTATGCCAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

83.258

100

0.833