Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5F91_RS11070 Genome accession   NZ_CP145064
Coordinates   2113410..2113727 (-) Length   105 a.a.
NCBI ID   WP_353174263.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_S_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2108410..2118727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F91_RS11045 (V5F91_11080) pilE 2109566..2109994 (-) 429 WP_353174260.1 pilin Machinery gene
  V5F91_RS11050 (V5F91_11085) lpxC 2110100..2111023 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5F91_RS11055 (V5F91_11095) - 2111525..2111887 (-) 363 Protein_2138 pilin -
  V5F91_RS11060 (V5F91_11100) - 2111853..2112284 (-) 432 Protein_2139 pilin -
  V5F91_RS11065 (V5F91_11105) - 2112755..2113486 (-) 732 WP_353174531.1 pilin -
  V5F91_RS11070 (V5F91_11110) pilE 2113410..2113727 (-) 318 WP_353174263.1 pilin Machinery gene
  V5F91_RS11075 (V5F91_11115) - 2114312..2115001 (-) 690 WP_353174266.1 M48 family metallopeptidase -
  V5F91_RS11080 (V5F91_11120) - 2114998..2115741 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  V5F91_RS11085 (V5F91_11125) gmhB 2115771..2116334 (-) 564 WP_003705078.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  V5F91_RS11090 (V5F91_11130) - 2116477..2118129 (+) 1653 WP_003705076.1 LTA synthase family protein -
  V5F91_RS11095 (V5F91_11135) - 2118196..2118711 (-) 516 WP_229690015.1 glycosyltransferase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11565.10 Da        Isoelectric Point: 10.3243

>NTDB_id=936777 V5F91_RS11070 WP_353174263.1 2113410..2113727(-) (pilE) [Neisseria gonorrhoeae strain WHO_S_2024]
MASTGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVKRESNNADAVTADGTDGANGTKIETKHLPSTCRDESSAGCIETPRA
DFKHFQKISRCRVLPESRQMAGKQR

Nucleotide


Download         Length: 318 bp        

>NTDB_id=936777 V5F91_RS11070 WP_353174263.1 2113410..2113727(-) (pilE) [Neisseria gonorrhoeae strain WHO_S_2024]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGAAAGCAACAACGCCGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACG
GCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCC
GATTTCAAACACTTCCAAAAAATCAGCCGTTGCCGGGTATTGCCTGAATCACGGCAAATGGCCGGAAAACAACGGTGA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.611

68.571

0.505
  pilE Neisseria gonorrhoeae MS11

60.563

67.619

0.41