Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5F91_RS11045 Genome accession   NZ_CP145064
Coordinates   2109566..2109994 (-) Length   142 a.a.
NCBI ID   WP_353174260.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_S_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2104566..2114994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F91_RS11020 (V5F91_11055) pilA 2104636..2105889 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  V5F91_RS11025 (V5F91_11060) - 2106202..2106375 (+) 174 WP_162098118.1 hypothetical protein -
  V5F91_RS11030 (V5F91_11065) - 2106363..2107195 (-) 833 Protein_2133 opacity family porin -
  V5F91_RS11035 (V5F91_11070) - 2107688..2108052 (-) 365 Protein_2134 pilin -
  V5F91_RS11040 (V5F91_11075) - 2108092..2108586 (-) 495 Protein_2135 pilin -
  V5F91_RS11045 (V5F91_11080) pilE 2109566..2109994 (-) 429 WP_353174260.1 pilin Machinery gene
  V5F91_RS11050 (V5F91_11085) lpxC 2110100..2111023 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5F91_RS11055 (V5F91_11095) - 2111525..2111887 (-) 363 Protein_2138 pilin -
  V5F91_RS11060 (V5F91_11100) - 2111853..2112284 (-) 432 Protein_2139 pilin -
  V5F91_RS11065 (V5F91_11105) - 2112755..2113486 (-) 732 WP_353174531.1 pilin -
  V5F91_RS11070 (V5F91_11110) pilE 2113410..2113727 (-) 318 WP_353174263.1 pilin Machinery gene

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15391.03 Da        Isoelectric Point: 7.1350

>NTDB_id=936776 V5F91_RS11045 WP_353174260.1 2109566..2109994(-) (pilE) [Neisseria gonorrhoeae strain WHO_S_2024]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPENNDSAGVASASKIIGKYVKEVKVENGVVTAQMASSNVNKEIK
DKRLSLWAKRQDGSVKWFCGQPVTRNAGNANNDDVTAANDANDGIDTKHLPSTCRDKASDAK

Nucleotide


Download         Length: 429 bp        

>NTDB_id=936776 V5F91_RS11045 WP_353174260.1 2109566..2109994(-) (pilE) [Neisseria gonorrhoeae strain WHO_S_2024]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCAAATGGCCGGAAAACAACGACTCTGCCGGCGTGGCATCCGCTTCAAAAATCATAGGCA
AATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTCACCGCCCAAATGGCTTCAAGCAACGTAAACAAAGAAATCAAA
GACAAAAGACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCAACGC
CGGCAACGCCAACAACGACGACGTCACCGCCGCCAACGACGCCAACGACGGCATCGACACCAAGCACCTGCCGTCAACCT
GCCGCGATAAGGCATCTGATGCCAAATGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

70.139

100

0.711
  pilE Neisseria gonorrhoeae strain FA1090

71.429

98.592

0.704