Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACEPMY_RS02955 Genome accession   NZ_CP168729
Coordinates   609760..610260 (-) Length   166 a.a.
NCBI ID   WP_011002677.1    Uniprot ID   Q8XVQ9
Organism   Ralstonia pseudosolanacearum strain RUN6340     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 604760..615260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPMY_RS02935 (ACEPMY_02935) - 605291..606436 (+) 1146 WP_071089841.1 pectate lyase -
  ACEPMY_RS02940 (ACEPMY_02940) corA 606474..607436 (-) 963 WP_197344973.1 magnesium/cobalt transporter CorA -
  ACEPMY_RS02945 (ACEPMY_02945) pyrF 607656..608471 (+) 816 WP_028853640.1 orotidine-5'-phosphate decarboxylase -
  ACEPMY_RS02950 (ACEPMY_02950) dmeF 608506..609733 (+) 1228 Protein_570 CDF family Co(II)/Ni(II) efflux transporter DmeF -
  ACEPMY_RS02955 (ACEPMY_02955) cinA 609760..610260 (-) 501 WP_011002677.1 CinA family protein Machinery gene
  ACEPMY_RS02960 (ACEPMY_02960) - 610286..610864 (-) 579 WP_019718243.1 phosphatidylglycerophosphatase A -
  ACEPMY_RS02965 (ACEPMY_02965) thiL 610861..611859 (-) 999 WP_020832689.1 thiamine-phosphate kinase -
  ACEPMY_RS02970 (ACEPMY_02970) - 612102..614447 (+) 2346 WP_011002674.1 NADP-dependent malic enzyme -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17466.92 Da        Isoelectric Point: 6.9696

>NTDB_id=936631 ACEPMY_RS02955 WP_011002677.1 609760..610260(-) (cinA) [Ralstonia pseudosolanacearum strain RUN6340]
MAESRALAQLAELVGDTLHKRSLMVATAESCTAGLVGAAITDIPGASAWFERGFVTYSNEAKSQMLGVPATLIREHGAVS
EPVAHAMAEGAVLNSRAQVALAVTGVAGPTGGTPDKPVGMVCFGWSNRLQTRVETRHFKGDRKQIRLQAAEHALRGLLDF
LDAAES

Nucleotide


Download         Length: 501 bp        

>NTDB_id=936631 ACEPMY_RS02955 WP_011002677.1 609760..610260(-) (cinA) [Ralstonia pseudosolanacearum strain RUN6340]
ATGGCTGAATCCCGCGCGCTGGCGCAACTGGCCGAACTGGTGGGCGACACGCTGCACAAGCGCAGTCTGATGGTGGCGAC
GGCGGAATCGTGCACCGCCGGGCTCGTCGGCGCGGCCATCACCGACATCCCGGGCGCGTCCGCGTGGTTCGAGCGCGGCT
TCGTCACGTATTCGAACGAAGCGAAATCGCAGATGCTGGGCGTGCCGGCCACGCTGATCCGCGAGCATGGCGCGGTGAGC
GAGCCGGTGGCGCACGCCATGGCCGAAGGCGCCGTGCTCAACAGCCGCGCACAGGTGGCGCTGGCCGTGACGGGCGTGGC
GGGACCGACCGGCGGCACACCCGACAAACCCGTCGGCATGGTGTGCTTCGGCTGGAGCAACCGCCTGCAGACGCGGGTGG
AAACCCGCCACTTCAAGGGCGACCGCAAGCAGATCCGGCTACAAGCCGCCGAGCATGCGCTGCGCGGCCTGCTGGACTTC
CTAGACGCCGCGGAAAGCTAG

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(9-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XVQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae R36A

40.816

88.554

0.361
  cinA Streptococcus pneumoniae Rx1

40.816

88.554

0.361
  cinA Streptococcus pneumoniae R6

40.816

88.554

0.361
  cinA Streptococcus pneumoniae D39

40.816

88.554

0.361