Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5F97_RS06445 Genome accession   NZ_CP145057
Coordinates   1237123..1237551 (+) Length   142 a.a.
NCBI ID   WP_050169685.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_alpha_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1232123..1242551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F97_RS06425 (V5F97_06455) nirK 1232628..1233806 (+) 1179 WP_353114435.1 copper-containing nitrite reductase -
  V5F97_RS06430 (V5F97_06460) - 1233984..1234739 (+) 756 WP_003702903.1 formylglycine-generating enzyme family protein -
  V5F97_RS06435 (V5F97_06465) - 1234982..1235365 (+) 384 Protein_1259 pilin -
  V5F97_RS06440 (V5F97_06470) lpxC 1236093..1237016 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5F97_RS06445 (V5F97_06475) pilE 1237123..1237551 (+) 429 WP_050169685.1 pilin Machinery gene
  V5F97_RS06450 (V5F97_06480) - 1237674..1237792 (+) 119 Protein_1262 pilin -
  V5F97_RS06455 (V5F97_06485) - 1238095..1238238 (+) 144 WP_003691943.1 hypothetical protein -
  V5F97_RS06460 (V5F97_06490) pilE 1238607..1239098 (+) 492 WP_353114437.1 pilin Machinery gene
  V5F97_RS06465 (V5F97_06495) - 1239640..1240473 (+) 834 WP_353114439.1 opacity family porin -
  V5F97_RS06470 (V5F97_06500) - 1240447..1240656 (-) 210 WP_050169701.1 hypothetical protein -
  V5F97_RS06475 (V5F97_06505) - 1240674..1241231 (-) 558 WP_003691591.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15481.28 Da        Isoelectric Point: 8.4701

>NTDB_id=936611 V5F97_RS06445 WP_050169685.1 1237123..1237551(+) (pilE) [Neisseria gonorrhoeae strain WHO_alpha_2024]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGIWPKDNTSAGVASSSSIKGKYVKEVEVKNGVVTAEMKSDGVNKEIK
DKRLSLWAKRENGSVKWFCGQPVKRDAGAKTGADDVKADGKDTDKINTKHLPSTCRDEHNAT

Nucleotide


Download         Length: 429 bp        

>NTDB_id=936611 V5F97_RS06445 WP_050169685.1 1237123..1237551(+) (pilE) [Neisseria gonorrhoeae strain WHO_alpha_2024]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCATATGGCCGAAAGACAACACTTCTGCCGGCGTGGCATCTTCTTCATCAATCAAAGGCA
AATATGTTAAAGAGGTTGAAGTTAAAAACGGCGTCGTTACCGCCGAAATGAAATCAGACGGCGTAAACAAAGAAATCAAA
GACAAAAGACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACGC
CGGCGCCAAAACCGGCGCCGACGACGTCAAAGCCGACGGCAAAGACACCGACAAAATCAACACCAAGCACCTGCCGTCAA
CCTGCCGCGATGAACATAATGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

69.444

100

0.704
  pilE Neisseria gonorrhoeae MS11

68.571

98.592

0.676