Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   V5F97_RS02685 Genome accession   NZ_CP145057
Coordinates   523626..524237 (+) Length   203 a.a.
NCBI ID   WP_050169630.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_alpha_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 518626..529237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F97_RS02660 (V5F97_02665) - 519056..519637 (-) 582 WP_047923823.1 superoxide dismutase -
  V5F97_RS02665 (V5F97_02670) dnaB 519801..521207 (+) 1407 WP_050169632.1 replicative DNA helicase -
  V5F97_RS02670 (V5F97_02675) pilH 521362..522027 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5F97_RS02675 (V5F97_02680) pilV 522059..522670 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  V5F97_RS02680 (V5F97_02685) pilJ 522667..523647 (+) 981 WP_010951046.1 PilW family protein Machinery gene
  V5F97_RS02685 (V5F97_02690) pilK 523626..524237 (+) 612 WP_050169630.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5F97_RS02690 (V5F97_02695) pilL 524239..524712 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  V5F97_RS02695 (V5F97_02700) - 524782..525090 (-) 309 WP_050161303.1 AzlD family protein -
  V5F97_RS02700 (V5F97_02705) - 525087..525798 (-) 712 Protein_522 AzlC family ABC transporter permease -
  V5F97_RS02705 (V5F97_02710) dut 525964..526416 (+) 453 WP_047951389.1 dUTP diphosphatase -
  V5F97_RS02710 (V5F97_02715) dapC 526488..527675 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  V5F97_RS02715 (V5F97_02720) yaaA 527831..528610 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22076.01 Da        Isoelectric Point: 8.4522

>NTDB_id=936601 V5F97_RS02685 WP_050169630.1 523626..524237(+) (pilK) [Neisseria gonorrhoeae strain WHO_alpha_2024]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNDNGNEEAFGNIVVQGKHTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTGKVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=936601 V5F97_RS02685 WP_050169630.1 523626..524237(+) (pilK) [Neisseria gonorrhoeae strain WHO_alpha_2024]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATGATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCACACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAAAGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.074

100

0.951