Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   V5F97_RS02670 Genome accession   NZ_CP145057
Coordinates   521362..522027 (+) Length   221 a.a.
NCBI ID   WP_047918678.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_alpha_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 516362..527027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F97_RS02645 (V5F97_02650) cysT 516637..517466 (-) 830 Protein_511 sulfate ABC transporter permease subunit CysT -
  V5F97_RS02650 (V5F97_02655) - 517652..517984 (+) 333 Protein_512 hypothetical protein -
  V5F97_RS02655 (V5F97_02660) - 518315..518824 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5F97_RS02660 (V5F97_02665) - 519056..519637 (-) 582 WP_047923823.1 superoxide dismutase -
  V5F97_RS02665 (V5F97_02670) dnaB 519801..521207 (+) 1407 WP_050169632.1 replicative DNA helicase -
  V5F97_RS02670 (V5F97_02675) pilH 521362..522027 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5F97_RS02675 (V5F97_02680) pilV 522059..522670 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  V5F97_RS02680 (V5F97_02685) pilJ 522667..523647 (+) 981 WP_010951046.1 PilW family protein Machinery gene
  V5F97_RS02685 (V5F97_02690) pilK 523626..524237 (+) 612 WP_050169630.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5F97_RS02690 (V5F97_02695) pilL 524239..524712 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  V5F97_RS02695 (V5F97_02700) - 524782..525090 (-) 309 WP_050161303.1 AzlD family protein -
  V5F97_RS02700 (V5F97_02705) - 525087..525798 (-) 712 Protein_522 AzlC family ABC transporter permease -
  V5F97_RS02705 (V5F97_02710) dut 525964..526416 (+) 453 WP_047951389.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24613.96 Da        Isoelectric Point: 8.6140

>NTDB_id=936598 V5F97_RS02670 WP_047918678.1 521362..522027(+) (pilH) [Neisseria gonorrhoeae strain WHO_alpha_2024]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDFGKKEQGMLAFGDKNDNKAYDGDAADVFLRNVVLNDDIKDKRINYTFNHIAFGSSQPTADRVVWTFNQNGTFGYTK
DQHLASTSSFFYSDGYIQIVLTDARAVSDADRKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=936598 V5F97_RS02670 WP_047918678.1 521362..522027(+) (pilH) [Neisseria gonorrhoeae strain WHO_alpha_2024]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTCGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTGCAAGCACATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.878

100

0.869