Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilI   Type   Machinery gene
Locus tag   V5F99_RS02320 Genome accession   NZ_CP145053
Coordinates   448687..449295 (+) Length   202 a.a.
NCBI ID   WP_047926671.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_beta_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443687..454295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F99_RS02295 (V5F99_02300) - 444134..444466 (+) 333 WP_003687908.1 hypothetical protein -
  V5F99_RS02300 (V5F99_02305) - 444793..445302 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5F99_RS02305 (V5F99_02310) - 445532..446113 (-) 582 WP_003698180.1 superoxide dismutase -
  V5F99_RS02310 (V5F99_02315) dnaB 446276..447682 (+) 1407 WP_047926755.1 replicative DNA helicase -
  V5F99_RS02315 (V5F99_02320) pilH 447990..448655 (+) 666 WP_047926672.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5F99_RS02320 (V5F99_02325) pilI 448687..449295 (+) 609 WP_047926671.1 type IV pilus modification protein PilV Machinery gene
  V5F99_RS02325 (V5F99_02330) pilJ 449292..450227 (+) 936 WP_010357463.1 PilW family protein Machinery gene
  V5F99_RS02330 (V5F99_02335) pilK 450206..450814 (+) 609 WP_047926669.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5F99_RS02335 (V5F99_02340) pilL 450816..451286 (+) 471 WP_169577278.1 PilX family type IV pilin Machinery gene
  V5F99_RS02340 (V5F99_02345) - 451356..451664 (-) 309 WP_010951048.1 AzlD family protein -
  V5F99_RS02345 (V5F99_02350) - 451661..452368 (-) 708 Protein_457 AzlC family ABC transporter permease -
  V5F99_RS02350 (V5F99_02355) dut 452534..452986 (+) 453 WP_003687923.1 dUTP diphosphatase -
  V5F99_RS02355 (V5F99_02360) dapC 453064..454251 (+) 1188 WP_003687924.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21991.96 Da        Isoelectric Point: 4.9985

>NTDB_id=936551 V5F99_RS02320 WP_047926671.1 448687..449295(+) (pilI) [Neisseria gonorrhoeae strain WHO_beta_2024]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLINPTIDSDSNKKN
YNLYTGPYTPTYSGGDFKLNNLISKKDLAKAQLDRFGYELKQALPDAVDIRYAVCKDSSGKAPTLSGGTFSSNCDDKANG
DTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 609 bp        

>NTDB_id=936551 V5F99_RS02320 WP_047926671.1 448687..449295(+) (pilI) [Neisseria gonorrhoeae strain WHO_beta_2024]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACGGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATCAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACACGGGGCCGTACACCCCCACTTACTCTGGCGGCGATTTCAAGCTTAATAATTTGATAAGCAAGAAGGA
TTTGGCAAAGGCCCAGTTGGACAGGTTCGGTTATGAATTGAAACAAGCCTTGCCGGATGCGGTAGATATTCGTTACGCTG
TCTGCAAGGATTCGTCGGGTAAGGCACCGACATTGTCCGGCGGTACTTTTTCTTCAAATTGCGACGATAAGGCAAACGGG
GATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAGGTGAGCGG
CGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilI Neisseria gonorrhoeae MS11

94.554

100

0.946
  pilV Neisseria gonorrhoeae MS11

94.554

100

0.946
  pilV Neisseria meningitidis 8013

84.466

100

0.861