Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   V5F99_RS02330 Genome accession   NZ_CP145053
Coordinates   450206..450814 (+) Length   202 a.a.
NCBI ID   WP_047926669.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_beta_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445206..455814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F99_RS02305 (V5F99_02310) - 445532..446113 (-) 582 WP_003698180.1 superoxide dismutase -
  V5F99_RS02310 (V5F99_02315) dnaB 446276..447682 (+) 1407 WP_047926755.1 replicative DNA helicase -
  V5F99_RS02315 (V5F99_02320) pilH 447990..448655 (+) 666 WP_047926672.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5F99_RS02320 (V5F99_02325) pilI 448687..449295 (+) 609 WP_047926671.1 type IV pilus modification protein PilV Machinery gene
  V5F99_RS02325 (V5F99_02330) pilJ 449292..450227 (+) 936 WP_010357463.1 PilW family protein Machinery gene
  V5F99_RS02330 (V5F99_02335) pilK 450206..450814 (+) 609 WP_047926669.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5F99_RS02335 (V5F99_02340) pilL 450816..451286 (+) 471 WP_169577278.1 PilX family type IV pilin Machinery gene
  V5F99_RS02340 (V5F99_02345) - 451356..451664 (-) 309 WP_010951048.1 AzlD family protein -
  V5F99_RS02345 (V5F99_02350) - 451661..452368 (-) 708 Protein_457 AzlC family ABC transporter permease -
  V5F99_RS02350 (V5F99_02355) dut 452534..452986 (+) 453 WP_003687923.1 dUTP diphosphatase -
  V5F99_RS02355 (V5F99_02360) dapC 453064..454251 (+) 1188 WP_003687924.1 succinyldiaminopimelate transaminase -
  V5F99_RS02360 (V5F99_02365) yaaA 454562..455341 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22152.01 Da        Isoelectric Point: 5.0966

>NTDB_id=936553 V5F99_RS02330 WP_047926669.1 450206..450814(+) (pilK) [Neisseria gonorrhoeae strain WHO_beta_2024]
MRKQNALTGIPTSEGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNDANEETFDNIVVKGKPTVEAVKRPCPAKSGKNSAGLCIDNQGVEYEKGTGNVSKMPR
YIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=936553 V5F99_RS02330 WP_047926669.1 450206..450814(+) (pilK) [Neisseria gonorrhoeae strain WHO_beta_2024]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGAGGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGATGCTAATGA
AGAGACTTTTGACAATATCGTGGTGAAAGGCAAGCCTACCGTTGAGGCCGTGAAGCGTCCTTGCCCTGCAAAGTCTGGCA
AAAATTCTGCCGGTCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCGCGT
TATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTGCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

93.596

100

0.941