Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5F98_RS11490 Genome accession   NZ_CP145052
Coordinates   2167729..2167947 (-) Length   72 a.a.
NCBI ID   WP_106278853.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_F_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2162729..2172947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F98_RS11475 (V5F98_11490) msrAB 2163134..2164702 (-) 1569 WP_003696503.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  V5F98_RS11480 (V5F98_11495) pilA 2164848..2166101 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  V5F98_RS11485 (V5F98_11500) - 2166368..2167126 (-) 759 Protein_2225 opacity family porin -
  V5F98_RS11490 (V5F98_11505) pilE 2167729..2167947 (-) 219 WP_106278853.1 pilin Machinery gene
  V5F98_RS11495 (V5F98_11510) - 2167951..2168387 (-) 437 Protein_2227 pilin -
  V5F98_RS11500 (V5F98_11515) - 2168756..2168899 (-) 144 WP_047924256.1 hypothetical protein -
  V5F98_RS11505 (V5F98_11520) - 2169004..2169084 (-) 81 Protein_2229 pilin -
  V5F98_RS11510 (V5F98_11525) - 2169202..2169609 (-) 408 Protein_2230 pilin -
  V5F98_RS11515 (V5F98_11530) lpxC 2169738..2170661 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5F98_RS11520 (V5F98_11535) - 2171236..2171625 (-) 390 Protein_2232 pilin -
  V5F98_RS11525 (V5F98_11540) - 2171981..2172937 (-) 957 WP_003694155.1 IS110-like element ISNgo3 family transposase -

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 8054.94 Da        Isoelectric Point: 9.3116

>NTDB_id=936532 V5F98_RS11490 WP_106278853.1 2167729..2167947(-) (pilE) [Neisseria gonorrhoeae strain WHO_F_2024]
MNSSNVNKEIKDKRLSLWAKRQDGSVKWFCGQPVQRDNAADPNDAVKDVTDANGKISTKHLPSTCRDKHSDT

Nucleotide


Download         Length: 219 bp        

>NTDB_id=936532 V5F98_RS11490 WP_106278853.1 2167729..2167947(-) (pilE) [Neisseria gonorrhoeae strain WHO_F_2024]
ATGAATTCAAGCAACGTAAACAAAGAAATCAAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTCAGCGCGACAACGCCGCCGACCCCAACGACGCCGTCAAAGACGTCACCGACGCCAACG
GCAAAATCAGCACCAAGCACCTGCCGTCAACCTGCCGCGATAAACACTCTGACACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(1-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

68.056

100

0.681
  pilE Neisseria gonorrhoeae MS11

61.972

98.611

0.611