Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G13_RS09235 Genome accession   NZ_CP145041
Coordinates   1764119..1764589 (+) Length   156 a.a.
NCBI ID   WP_003701721.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_M_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1759119..1769589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G13_RS09210 (V5G13_09230) metG 1760023..1762077 (+) 2055 WP_106176355.1 methionine--tRNA ligase -
  V5G13_RS09215 (V5G13_09235) - 1762152..1762460 (-) 309 Protein_1792 NAD(P)-dependent oxidoreductase -
  V5G13_RS09220 (V5G13_09240) - 1762464..1762796 (+) 333 Protein_1793 pilin -
  V5G13_RS09225 (V5G13_09245) - 1762823..1763178 (+) 356 Protein_1794 pilin -
  V5G13_RS09230 (V5G13_09250) pilE 1763592..1764080 (+) 489 WP_269472471.1 pilin Machinery gene
  V5G13_RS09235 (V5G13_09255) pilE 1764119..1764589 (+) 471 WP_003701721.1 pilin Machinery gene
  V5G13_RS09240 (V5G13_09260) pilE 1764801..1765220 (+) 420 WP_106176324.1 pilin Machinery gene
  V5G13_RS09245 (V5G13_09265) thiC 1765708..1767609 (-) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -
  V5G13_RS09255 (V5G13_09275) - 1768207..1769082 (+) 876 WP_003686971.1 NUDIX hydrolase family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17032.54 Da        Isoelectric Point: 9.7744

>NTDB_id=936331 V5G13_RS09235 WP_003701721.1 1764119..1764589(+) (pilE) [Neisseria gonorrhoeae strain WHO_M_2024]
MASSDKIKGKYVQSVTVAKGVVTAQMASTGVNKEIKDKRLSLWAKREDGSVKWFCGQPVKRTGDNDDDVTADKDDKEIDT
KHLPSTCRDASSAVCIETPPTAFYKNTQTVIPTKVGIRNAKSKETVLPDKFLRRSVGIPACAGMTAERFLLLPINS

Nucleotide


Download         Length: 471 bp        

>NTDB_id=936331 V5G13_RS09235 WP_003701721.1 1764119..1764589(+) (pilE) [Neisseria gonorrhoeae strain WHO_M_2024]
GTGGCATCCTCCGACAAAATCAAAGGCAAATATGTTCAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAATGGC
TTCAACCGGCGTAAACAAAGAAATCAAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTAAGCGCACCGGCGACAACGACGACGACGTTACCGCCGACAAAGACGACAAAGAAATCGACACC
AAGCACCTGCCGTCAACCTGCCGCGACGCTTCATCTGCCGTTTGCATAGAAACACCACCTACGGCTTTCTATAAAAATAC
CCAAACCGTCATTCCCACAAAAGTGGGAATCCGGAACGCAAAATCTAAAGAAACCGTTTTACCCGATAAGTTTCTGCGCC
GATCGGTCGGGATTCCCGCCTGCGCGGGAATGACGGCGGAGCGGTTTCTGTTGCTCCCGATAAATTCCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

80.645

59.615

0.481
  pilE Neisseria gonorrhoeae MS11

71.264

55.769

0.397