Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G13_RS09230 Genome accession   NZ_CP145041
Coordinates   1763592..1764080 (+) Length   162 a.a.
NCBI ID   WP_269472471.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_M_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1758592..1769080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G13_RS09210 (V5G13_09230) metG 1760023..1762077 (+) 2055 WP_106176355.1 methionine--tRNA ligase -
  V5G13_RS09215 (V5G13_09235) - 1762152..1762460 (-) 309 Protein_1792 NAD(P)-dependent oxidoreductase -
  V5G13_RS09220 (V5G13_09240) - 1762464..1762796 (+) 333 Protein_1793 pilin -
  V5G13_RS09225 (V5G13_09245) - 1762823..1763178 (+) 356 Protein_1794 pilin -
  V5G13_RS09230 (V5G13_09250) pilE 1763592..1764080 (+) 489 WP_269472471.1 pilin Machinery gene
  V5G13_RS09235 (V5G13_09255) pilE 1764119..1764589 (+) 471 WP_003701721.1 pilin Machinery gene
  V5G13_RS09240 (V5G13_09260) pilE 1764801..1765220 (+) 420 WP_106176324.1 pilin Machinery gene
  V5G13_RS09245 (V5G13_09265) thiC 1765708..1767609 (-) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17714.07 Da        Isoelectric Point: 9.8038

>NTDB_id=936330 V5G13_RS09230 WP_269472471.1 1763592..1764080(+) (pilE) [Neisseria gonorrhoeae strain WHO_M_2024]
MGIRNVKSKETVLPDKFPYRQTRIPARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNDSAGVASPPSNIKGKYVESVTV
ENGVVTAKMLSSGVNKEIQGKKLSLWAKREAGSVKWFCGRPVKRDAKDGTDDVAKDGKDNEKIDTKHLPSTCRDESSLPG
IA

Nucleotide


Download         Length: 489 bp        

>NTDB_id=936330 V5G13_RS09230 WP_269472471.1 1763592..1764080(+) (pilE) [Neisseria gonorrhoeae strain WHO_M_2024]
GTGGGAATCCGGAACGTAAAATCTAAAGAAACCGTTTTACCCGATAAGTTTCCGTACCGACAGACCCGGATTCCCGCCCG
CGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAAT
GGCCGGAAAACAACGACTCTGCCGGCGTGGCATCCCCCCCCTCCAACATCAAAGGCAAATATGTTGAAAGCGTTACGGTC
GAAAACGGCGTCGTTACCGCCAAAATGCTTTCAAGCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTATCCCTGTGGGC
CAAGCGTGAAGCCGGTTCGGTAAAATGGTTCTGCGGACGGCCGGTTAAGCGCGACGCCAAAGACGGCACCGACGACGTCG
CCAAAGACGGCAAAGACAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCGTTGCCGGGT
ATTGCCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(26-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

77.273

81.481

0.63
  pilE Neisseria gonorrhoeae strain FA1090

74.242

81.481

0.605