Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilI   Type   Machinery gene
Locus tag   V5F93_RS02680 Genome accession   NZ_CP145035
Coordinates   521040..521648 (+) Length   202 a.a.
NCBI ID   WP_047923834.1    Uniprot ID   A0AAX2TTG8
Organism   Neisseria gonorrhoeae strain WHO_P_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 516040..526648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F93_RS02655 (V5F93_02660) - 516483..516815 (+) 333 WP_003687908.1 hypothetical protein -
  V5F93_RS02660 (V5F93_02665) - 517146..517655 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5F93_RS02665 (V5F93_02670) - 517887..518468 (-) 582 WP_047923823.1 superoxide dismutase -
  V5F93_RS02670 (V5F93_02675) dnaB 518632..520038 (+) 1407 WP_047923824.1 replicative DNA helicase -
  V5F93_RS02675 (V5F93_02680) pilH 520346..521008 (+) 663 WP_047923835.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5F93_RS02680 (V5F93_02685) pilI 521040..521648 (+) 609 WP_047923834.1 type IV pilus modification protein PilV Machinery gene
  V5F93_RS02685 (V5F93_02690) pilJ 521645..522586 (+) 942 WP_047923833.1 PilW family protein Machinery gene
  V5F93_RS02690 (V5F93_02695) pilK 522565..523176 (+) 612 WP_047923832.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5F93_RS02695 (V5F93_02700) pilL 523178..523651 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  V5F93_RS02700 (V5F93_02705) - 523721..524029 (-) 309 WP_025456241.1 AzlD family protein -
  V5F93_RS02705 (V5F93_02710) - 524026..524737 (-) 712 Protein_523 AzlC family ABC transporter permease -
  V5F93_RS02710 (V5F93_02715) dut 524903..525355 (+) 453 WP_003701071.1 dUTP diphosphatase -
  V5F93_RS02715 (V5F93_02720) dapC 525427..526614 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21893.87 Da        Isoelectric Point: 5.2730

>NTDB_id=936209 V5F93_RS02680 WP_047923834.1 521040..521648(+) (pilI) [Neisseria gonorrhoeae strain WHO_P_2024]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYTGSYPPTSSDGDFKLNNLISKTDLAKAQLDRFGYELKQALPDAVAIRYAVCKDSSGDAPTLSGNTFSSNCDKKANG
DTLIKVLWVNDSAGDSDIFRTNLGVSGGNIVYTYQARVGGRE

Nucleotide


Download         Length: 609 bp        

>NTDB_id=936209 V5F93_RS02680 WP_047923834.1 521040..521648(+) (pilI) [Neisseria gonorrhoeae strain WHO_P_2024]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACACGGGGTCGTACCCCCCCACTTCCTCTGACGGCGATTTCAAGCTTAATAATTTGATAAGTAAGACGGA
TTTGGCAAAAGCCCAGTTGGACAGGTTCGGTTATGAATTGAAACAAGCCTTGCCGGATGCGGTAGCTATTCGTTACGCCG
TCTGCAAGGATTCGTCGGGTGACGCGCCGACATTGTCCGGCAATACTTTTTCTTCAAATTGCGACAAGAAGGCAAACGGG
GATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTTCCGTACGAATCTTGGGGTGAGCGG
CGGCAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilI Neisseria gonorrhoeae MS11

98.02

100

0.98
  pilV Neisseria gonorrhoeae MS11

98.02

100

0.98
  pilV Neisseria meningitidis 8013

84.951

100

0.866