Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   V5F95_RS06695 Genome accession   NZ_CP145032
Coordinates   1284173..1284646 (-) Length   157 a.a.
NCBI ID   WP_172587039.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_Q_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1279173..1289646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F95_RS06670 (V5F95_06675) yaaA 1280270..1281049 (-) 780 WP_003706583.1 peroxide stress protein YaaA -
  V5F95_RS06675 (V5F95_06680) dapC 1281205..1282392 (-) 1188 WP_149032485.1 succinyldiaminopimelate transaminase -
  V5F95_RS06680 (V5F95_06685) dut 1282470..1282922 (-) 453 WP_010359930.1 dUTP diphosphatase -
  V5F95_RS06685 (V5F95_06690) - 1283088..1283798 (+) 711 Protein_1305 AzlC family ABC transporter permease -
  V5F95_RS06690 (V5F95_06695) - 1283795..1284103 (+) 309 WP_010359926.1 AzlD family protein -
  V5F95_RS06695 (V5F95_06700) pilL 1284173..1284646 (-) 474 WP_172587039.1 PilX family type IV pilin Machinery gene
  V5F95_RS06700 (V5F95_06705) pilK 1284648..1285256 (-) 609 WP_050171190.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5F95_RS06705 (V5F95_06710) pilJ 1285235..1286212 (-) 978 WP_149032483.1 PilW family protein Machinery gene
  V5F95_RS06710 (V5F95_06715) pilV 1286209..1286820 (-) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  V5F95_RS06715 (V5F95_06720) pilH 1286852..1287514 (-) 663 WP_149032537.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5F95_RS06720 (V5F95_06725) dnaB 1287822..1289228 (-) 1407 WP_050164993.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17469.18 Da        Isoelectric Point: 9.7327

>NTDB_id=936171 V5F95_RS06695 WP_172587039.1 1284173..1284646(-) (pilL) [Neisseria gonorrhoeae strain WHO_Q_2024]
MEQKGFTLIEMMIVVTILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDTLKSKLEIFVSGYKM
NPKIAKKYSVSVRLVNEGKPRAYRLVGVPNAGTGYTLSVWMNSVGDGYKCRNAASAQTYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=936171 V5F95_RS06695 WP_172587039.1 1284173..1284646(-) (pilL) [Neisseria gonorrhoeae strain WHO_Q_2024]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCACGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATACCCTCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGCGGCTTGTCAATGAGGGAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGGGTTATACTCTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTAATGCCG
CTTCTGCCCAGACCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

93.631

100

0.936
  pilX Neisseria meningitidis 8013

84.713

100

0.847