Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   V5F95_RS06700 Genome accession   NZ_CP145032
Coordinates   1284648..1285256 (-) Length   202 a.a.
NCBI ID   WP_050171190.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_Q_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1279648..1290256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F95_RS06670 (V5F95_06675) yaaA 1280270..1281049 (-) 780 WP_003706583.1 peroxide stress protein YaaA -
  V5F95_RS06675 (V5F95_06680) dapC 1281205..1282392 (-) 1188 WP_149032485.1 succinyldiaminopimelate transaminase -
  V5F95_RS06680 (V5F95_06685) dut 1282470..1282922 (-) 453 WP_010359930.1 dUTP diphosphatase -
  V5F95_RS06685 (V5F95_06690) - 1283088..1283798 (+) 711 Protein_1305 AzlC family ABC transporter permease -
  V5F95_RS06690 (V5F95_06695) - 1283795..1284103 (+) 309 WP_010359926.1 AzlD family protein -
  V5F95_RS06695 (V5F95_06700) pilL 1284173..1284646 (-) 474 WP_172587039.1 PilX family type IV pilin Machinery gene
  V5F95_RS06700 (V5F95_06705) pilK 1284648..1285256 (-) 609 WP_050171190.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5F95_RS06705 (V5F95_06710) pilJ 1285235..1286212 (-) 978 WP_149032483.1 PilW family protein Machinery gene
  V5F95_RS06710 (V5F95_06715) pilV 1286209..1286820 (-) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  V5F95_RS06715 (V5F95_06720) pilH 1286852..1287514 (-) 663 WP_149032537.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5F95_RS06720 (V5F95_06725) dnaB 1287822..1289228 (-) 1407 WP_050164993.1 replicative DNA helicase -
  V5F95_RS06725 (V5F95_06730) - 1289392..1289973 (+) 582 WP_003690895.1 superoxide dismutase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22026.84 Da        Isoelectric Point: 5.3764

>NTDB_id=936172 V5F95_RS06700 WP_050171190.1 1284648..1285256(-) (pilK) [Neisseria gonorrhoeae strain WHO_Q_2024]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNDANEETFDNIVVKGKPTVEAVKRSCPAKSGKNSTDLCIDNQGVEYNKGTAGVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=936172 V5F95_RS06700 WP_050171190.1 1284648..1285256(-) (pilK) [Neisseria gonorrhoeae strain WHO_Q_2024]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGATGCTAATGA
AGAGACTTTTGACAATATCGTGGTGAAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTGGCA
AAAATTCTACCGACCTGTGCATTGACAATCAGGGAGTGGAATATAACAAAGGCACGGCAGGCGTCAGCAAAATGCCGCGT
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

92.611

100

0.931