Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G17_RS09410 Genome accession   NZ_CP145024
Coordinates   1797225..1797632 (+) Length   135 a.a.
NCBI ID   WP_171001314.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_U_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1792225..1802632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G17_RS09380 (V5G17_09400) - 1792756..1793193 (+) 438 Protein_1825 pilin -
  V5G17_RS09385 (V5G17_09405) - 1793327..1793704 (+) 378 Protein_1826 pilin -
  V5G17_RS09390 (V5G17_09410) - 1793882..1794250 (+) 369 Protein_1827 pilin -
  V5G17_RS09395 (V5G17_09415) - 1794291..1794647 (+) 357 Protein_1828 pilin -
  V5G17_RS09400 (V5G17_09420) - 1795128..1795492 (+) 365 Protein_1829 pilin -
  V5G17_RS09405 (V5G17_09430) lpxC 1796196..1797119 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5G17_RS09410 (V5G17_09435) pilE 1797225..1797632 (+) 408 WP_171001314.1 pilin Machinery gene
  V5G17_RS09415 (V5G17_09440) - 1798261..1798941 (+) 681 WP_137655528.1 opacity family porin -
  V5G17_RS09420 (V5G17_09445) - 1798955..1799173 (+) 219 WP_171001307.1 hypothetical protein -
  V5G17_RS09425 (V5G17_09450) pilA 1799210..1800463 (-) 1254 WP_047919725.1 signal recognition particle-docking protein FtsY Machinery gene
  V5G17_RS09430 (V5G17_09455) msrAB 1800609..1802177 (+) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14466.06 Da        Isoelectric Point: 7.1343

>NTDB_id=936040 V5G17_RS09410 WP_171001314.1 1797225..1797632(+) (pilE) [Neisseria gonorrhoeae strain WHO_U_2024]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPSDNSAAGVASSATDIKGKYVESVTVENGVVTAKMKPSGVNKEI
QGKKLSLWAKRENGSVKWFCGQPVTRNGDTVADANDGIDTKHLPSTCRDKASDAN

Nucleotide


Download         Length: 408 bp        

>NTDB_id=936040 V5G17_RS09410 WP_171001314.1 1797225..1797632(+) (pilE) [Neisseria gonorrhoeae strain WHO_U_2024]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCAAATGGCCATCCGACAATAGTGCCGCCGGCGTGGCATCCTCCGCCACCGACATCAAAG
GCAAATATGTTGAAAGCGTTACGGTCGAAAACGGCGTCGTTACCGCCAAAATGAAACCAAGCGGCGTAAACAAAGAAATC
CAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCAA
CGGCGACACCGTTGCCGACGCCAACGACGGCATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAGGCATCTGATG
CCAACTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

75.362

100

0.77
  pilE Neisseria gonorrhoeae strain FA1090

72.059

100

0.726