Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   V5G20_RS15165 Genome accession   NZ_CP144922
Coordinates   3202550..3203266 (+) Length   238 a.a.
NCBI ID   WP_003386945.1    Uniprot ID   -
Organism   Brevibacillus borstelensis strain CP19     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3197550..3208266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G20_RS15135 (V5G20_15135) - 3197668..3198210 (-) 543 WP_003386939.1 hypothetical protein -
  V5G20_RS15140 (V5G20_15140) - 3198402..3198998 (-) 597 WP_024985058.1 VanW family protein -
  V5G20_RS15145 (V5G20_15145) - 3199225..3199851 (-) 627 WP_024985057.1 DsbA family oxidoreductase -
  V5G20_RS15150 (V5G20_15150) - 3199971..3200702 (-) 732 WP_338461174.1 ABC transporter permease -
  V5G20_RS15155 (V5G20_15155) - 3200714..3201463 (-) 750 WP_081924459.1 ABC transporter permease -
  V5G20_RS15160 (V5G20_15160) - 3201463..3202374 (-) 912 WP_039071133.1 ABC transporter ATP-binding protein -
  V5G20_RS15165 (V5G20_15165) scnR 3202550..3203266 (+) 717 WP_003386945.1 response regulator transcription factor Regulator
  V5G20_RS15170 (V5G20_15170) - 3203263..3204654 (+) 1392 WP_338461179.1 HAMP domain-containing sensor histidine kinase -
  V5G20_RS15175 (V5G20_15175) - 3204909..3205817 (-) 909 WP_338461181.1 aminoglycoside phosphotransferase family protein -
  V5G20_RS15180 (V5G20_15180) - 3206386..3207831 (+) 1446 WP_024985259.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26802.92 Da        Isoelectric Point: 5.7181

>NTDB_id=935300 V5G20_RS15165 WP_003386945.1 3202550..3203266(+) (scnR) [Brevibacillus borstelensis strain CP19]
MDQIKQKKVLIVDDEHEIREMIDSFLRKEGFFRIFHAASCSEAIEVCLSDKPDIAILDVMLPDGDGFSLFSSLRRISDIP
VLFLSARNKDEDRILGLGLGADDYIVKPFLPRELMLRLGAILRRVYAPPKQERLPVFALGSFTVDLEGGVVRSASGEQPL
TAKEHALLKKLYENRGRIVTSDALCNAVWGDDSFGYENTLMVHIRRIREKIESDPSSPEHLLTVRGLGYKLMASEDRA

Nucleotide


Download         Length: 717 bp        

>NTDB_id=935300 V5G20_RS15165 WP_003386945.1 3202550..3203266(+) (scnR) [Brevibacillus borstelensis strain CP19]
ATGGACCAGATCAAGCAAAAGAAAGTGCTCATCGTGGATGATGAGCATGAAATACGCGAGATGATCGACAGTTTTTTGCG
AAAGGAAGGCTTTTTTCGGATATTCCATGCGGCAAGCTGCAGCGAGGCGATCGAGGTCTGCCTGTCGGACAAGCCGGACA
TTGCCATTTTGGATGTCATGCTGCCGGATGGGGACGGCTTTTCCCTGTTTTCTTCCCTGCGCAGAATTTCAGACATACCT
GTGCTCTTTCTTTCGGCCAGAAACAAGGATGAAGACCGGATCCTCGGGCTTGGCCTCGGCGCCGACGATTACATTGTCAA
GCCGTTTTTGCCTCGCGAGCTTATGCTGCGCCTGGGAGCCATATTGCGGCGCGTGTACGCTCCGCCAAAGCAGGAGCGGC
TGCCTGTTTTTGCGCTGGGGAGCTTTACTGTCGATTTGGAAGGGGGCGTGGTACGCAGCGCGAGCGGAGAACAGCCGTTG
ACCGCCAAGGAGCATGCCCTGCTGAAAAAGCTGTATGAAAACCGCGGGCGCATCGTCACAAGCGACGCTTTGTGCAACGC
GGTATGGGGTGACGACAGCTTTGGATACGAAAATACCCTCATGGTTCACATCCGGCGCATCCGGGAAAAAATCGAGTCGG
ATCCCTCCTCCCCTGAACACCTGCTGACTGTAAGAGGGCTGGGCTACAAGCTGATGGCAAGCGAGGATCGGGCATGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(159-231)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.435

96.639

0.487
  micA Streptococcus pneumoniae Cp1015

41.304

96.639

0.399
  vicR Streptococcus mutans UA159

39.485

97.899

0.387