Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   V5G22_RS12580 Genome accession   NZ_CP144920
Coordinates   2495887..2496525 (+) Length   212 a.a.
NCBI ID   WP_016886111.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CP26     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2490887..2501525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G22_RS12555 (V5G22_12555) - 2491278..2491616 (-) 339 WP_003184862.1 hypothetical protein -
  V5G22_RS12560 (V5G22_12560) degQ 2492111..2492251 (+) 141 WP_016886113.1 degradation enzyme regulation protein DegQ Regulator
  V5G22_RS12565 (V5G22_12565) - 2492440..2493321 (+) 882 WP_009329511.1 polyprenyl synthetase family protein -
  V5G22_RS12570 (V5G22_12570) comX 2493325..2493498 (+) 174 WP_009329510.1 competence pheromone ComX -
  V5G22_RS12575 (V5G22_12575) comP 2493500..2495800 (+) 2301 WP_029327038.1 ATP-binding protein Regulator
  V5G22_RS12580 (V5G22_12580) comA 2495887..2496525 (+) 639 WP_016886111.1 response regulator transcription factor Regulator
  V5G22_RS12585 (V5G22_12585) - 2496542..2496931 (+) 390 WP_003184847.1 hotdog fold thioesterase -
  V5G22_RS12590 (V5G22_12590) mnhG 2496971..2497345 (-) 375 WP_003184844.1 monovalent cation/H(+) antiporter subunit G -
  V5G22_RS12595 (V5G22_12595) - 2497329..2497613 (-) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  V5G22_RS12600 (V5G22_12600) - 2497613..2498089 (-) 477 WP_003184840.1 Na+/H+ antiporter subunit E -
  V5G22_RS12605 (V5G22_12605) - 2498095..2499573 (-) 1479 WP_003184838.1 Na+/H+ antiporter subunit D -
  V5G22_RS12610 (V5G22_12610) - 2499566..2499907 (-) 342 WP_003184836.1 Na(+)/H(+) antiporter subunit C -
  V5G22_RS12615 (V5G22_12615) - 2499907..2500338 (-) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24161.55 Da        Isoelectric Point: 4.8017

>NTDB_id=935207 V5G22_RS12580 WP_016886111.1 2495887..2496525(+) (comA) [Bacillus licheniformis strain CP26]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIKEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=935207 V5G22_RS12580 WP_016886111.1 2495887..2496525(+) (comA) [Bacillus licheniformis strain CP26]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAACATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACATGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTAAAGAGTACATATATCAGGTTCTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGT
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGACCTCTTGACTGAAAGGGAATGCCTGATTTTA
AAAGAAGTCGAAAAAGGCTACACAAATCAGGAAATTGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGCTT
GACTTCCGTATTCAGCAAGCTGAATGTAGGATCAAGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGTGTACTCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778