Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   V5G22_RS12560 Genome accession   NZ_CP144920
Coordinates   2492111..2492251 (+) Length   46 a.a.
NCBI ID   WP_016886113.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CP26     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2487111..2497251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G22_RS12535 (V5G22_12535) - 2487212..2487613 (+) 402 WP_003184870.1 YueI family protein -
  V5G22_RS12540 (V5G22_12540) - 2487798..2488349 (+) 552 WP_003184868.1 isochorismatase family cysteine hydrolase -
  V5G22_RS12545 (V5G22_12545) - 2488367..2489836 (+) 1470 WP_016886115.1 nicotinate phosphoribosyltransferase -
  V5G22_RS12550 (V5G22_12550) - 2490015..2491235 (+) 1221 WP_003184864.1 HDOD domain-containing protein -
  V5G22_RS12555 (V5G22_12555) - 2491278..2491616 (-) 339 WP_003184862.1 hypothetical protein -
  V5G22_RS12560 (V5G22_12560) degQ 2492111..2492251 (+) 141 WP_016886113.1 degradation enzyme regulation protein DegQ Regulator
  V5G22_RS12565 (V5G22_12565) - 2492440..2493321 (+) 882 WP_009329511.1 polyprenyl synthetase family protein -
  V5G22_RS12570 (V5G22_12570) comX 2493325..2493498 (+) 174 WP_009329510.1 competence pheromone ComX -
  V5G22_RS12575 (V5G22_12575) comP 2493500..2495800 (+) 2301 WP_029327038.1 ATP-binding protein Regulator
  V5G22_RS12580 (V5G22_12580) comA 2495887..2496525 (+) 639 WP_016886111.1 response regulator transcription factor Regulator
  V5G22_RS12585 (V5G22_12585) - 2496542..2496931 (+) 390 WP_003184847.1 hotdog fold thioesterase -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5731.56 Da        Isoelectric Point: 8.5183

>NTDB_id=935205 V5G22_RS12560 WP_016886113.1 2492111..2492251(+) (degQ) [Bacillus licheniformis strain CP26]
MEKQQIEELKQLLWRLENEIRETKDSLRKINKSIDQYDKFTYLKTS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=935205 V5G22_RS12560 WP_016886113.1 2492111..2492251(+) (degQ) [Bacillus licheniformis strain CP26]
GTGGAAAAGCAACAAATTGAAGAATTAAAACAACTGCTTTGGCGGCTAGAGAATGAAATCAGAGAAACAAAGGACTCCTT
GCGCAAGATTAACAAAAGCATTGATCAATACGATAAGTTCACATATTTAAAAACCTCGTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

69.048

91.304

0.63