Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CVIC8835_RS03895 Genome accession   NZ_CP144915
Coordinates   728417..729181 (+) Length   254 a.a.
NCBI ID   WP_086255312.1    Uniprot ID   -
Organism   Campylobacter vicugnae strain RM8835     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 723417..734181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVIC8835_RS03875 (CVIC8835_03875) - 723500..725422 (-) 1923 WP_086255315.1 ribonuclease R family protein -
  CVIC8835_RS03880 (CVIC8835_03880) - 725419..726231 (-) 813 WP_086255314.1 HDOD domain-containing protein -
  CVIC8835_RS03885 (CVIC8835_03885) ilvC 726373..727395 (+) 1023 WP_086246551.1 ketol-acid reductoisomerase -
  CVIC8835_RS03890 (CVIC8835_03890) - 727396..728433 (+) 1038 WP_086255313.1 divergent polysaccharide deacetylase family protein -
  CVIC8835_RS03895 (CVIC8835_03895) dprA 728417..729181 (+) 765 WP_086255312.1 DNA-processing protein DprA Machinery gene
  CVIC8835_RS03900 (CVIC8835_03900) dprB 729178..729549 (+) 372 WP_086255311.1 Holliday junction resolvase RuvX Machinery gene
  CVIC8835_RS03905 (CVIC8835_03905) - 729546..730412 (+) 867 WP_086255310.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CVIC8835_RS03910 (CVIC8835_03910) purU 730506..731336 (+) 831 WP_086246546.1 formyltetrahydrofolate deformylase -
  CVIC8835_RS03915 (CVIC8835_03915) - 731337..731825 (+) 489 WP_086248272.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  CVIC8835_RS03920 (CVIC8835_03920) - 731813..733105 (+) 1293 WP_086255309.1 endonuclease/exonuclease/phosphatase family protein -
  CVIC8835_RS03925 (CVIC8835_03925) - 733098..733289 (+) 192 WP_086248274.1 hypothetical protein -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28255.54 Da        Isoelectric Point: 8.1750

>NTDB_id=935139 CVIC8835_RS03895 WP_086255312.1 728417..729181(+) (dprA) [Campylobacter vicugnae strain RM8835]
MNFITEFKLNSNFKNPPQKLYYKGNLELLNSPKVAIVGSRKCSVYTKNMTLNLASTLKKYGVCVVSGAAIGVDIYAHMGA
YPNTIAVFGNGLDQIYPLQNSKIIKDIYQNSLALSAYEPDTLAKGWQFLERNLITVALSDAVVVAQADIKSGSMSSARAA
IKFGIPLYVLPQRLGESSGTNELLSSQKAKIITDFDKFAMEFGVKNYEEKSDEIIEFIKKNPNFDECYSKFGDKIYEYEL
DGKIAIDGIYVRIL

Nucleotide


Download         Length: 765 bp        

>NTDB_id=935139 CVIC8835_RS03895 WP_086255312.1 728417..729181(+) (dprA) [Campylobacter vicugnae strain RM8835]
ATGAACTTTATAACTGAGTTTAAGCTAAATTCAAATTTTAAAAATCCTCCACAAAAGCTTTATTATAAGGGTAATTTAGA
ATTACTAAATTCTCCAAAAGTCGCAATTGTAGGCTCTAGAAAATGCTCAGTATATACTAAAAATATGACTTTAAACTTAG
CTTCTACATTAAAAAAATATGGCGTTTGCGTTGTTAGTGGTGCGGCAATTGGCGTTGATATTTATGCTCATATGGGTGCA
TATCCAAATACAATCGCAGTTTTTGGCAATGGTTTAGACCAGATTTATCCACTGCAAAACTCCAAAATTATAAAAGATAT
ATATCAAAACTCACTAGCACTTAGCGCATATGAGCCAGATACTTTGGCAAAAGGGTGGCAATTTTTAGAGCGAAATTTAA
TCACAGTAGCCTTAAGTGATGCAGTAGTTGTAGCTCAAGCAGATATAAAAAGTGGTTCTATGAGTAGTGCAAGAGCTGCT
ATTAAATTTGGTATTCCATTATATGTTTTGCCTCAAAGATTAGGTGAGAGTAGCGGTACAAATGAACTACTATCAAGCCA
AAAGGCAAAGATTATTACAGATTTTGATAAATTTGCTATGGAATTTGGTGTGAAAAATTATGAAGAAAAGAGTGATGAGA
TTATAGAATTTATCAAAAAAAACCCAAATTTTGATGAGTGTTATAGCAAATTTGGGGATAAAATTTATGAATATGAACTA
GATGGCAAGATTGCTATTGATGGAATTTATGTGAGAATTTTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(11-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.974

92.126

0.543
  dprA Helicobacter pylori 26695

49.789

93.307

0.465