Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CVIC8835_RS03900 Genome accession   NZ_CP144915
Coordinates   729178..729549 (+) Length   123 a.a.
NCBI ID   WP_086255311.1    Uniprot ID   -
Organism   Campylobacter vicugnae strain RM8835     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 724178..734549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVIC8835_RS03880 (CVIC8835_03880) - 725419..726231 (-) 813 WP_086255314.1 HDOD domain-containing protein -
  CVIC8835_RS03885 (CVIC8835_03885) ilvC 726373..727395 (+) 1023 WP_086246551.1 ketol-acid reductoisomerase -
  CVIC8835_RS03890 (CVIC8835_03890) - 727396..728433 (+) 1038 WP_086255313.1 divergent polysaccharide deacetylase family protein -
  CVIC8835_RS03895 (CVIC8835_03895) dprA 728417..729181 (+) 765 WP_086255312.1 DNA-processing protein DprA Machinery gene
  CVIC8835_RS03900 (CVIC8835_03900) dprB 729178..729549 (+) 372 WP_086255311.1 Holliday junction resolvase RuvX Machinery gene
  CVIC8835_RS03905 (CVIC8835_03905) - 729546..730412 (+) 867 WP_086255310.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CVIC8835_RS03910 (CVIC8835_03910) purU 730506..731336 (+) 831 WP_086246546.1 formyltetrahydrofolate deformylase -
  CVIC8835_RS03915 (CVIC8835_03915) - 731337..731825 (+) 489 WP_086248272.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  CVIC8835_RS03920 (CVIC8835_03920) - 731813..733105 (+) 1293 WP_086255309.1 endonuclease/exonuclease/phosphatase family protein -
  CVIC8835_RS03925 (CVIC8835_03925) - 733098..733289 (+) 192 WP_086248274.1 hypothetical protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13656.91 Da        Isoelectric Point: 8.4444

>NTDB_id=935140 CVIC8835_RS03900 WP_086255311.1 729178..729549(+) (dprB) [Campylobacter vicugnae strain RM8835]
MIVAIDIGLKRIGMAVSLDGKIALPIAPILRKNRNQAAKDVSNALKDREAKILVVGLPKGGSSEAEMERRIKHFISLLDF
DGQIYYENEAYSSLEASDLIDDKRDGKLDSVAAMIILERFLKR

Nucleotide


Download         Length: 372 bp        

>NTDB_id=935140 CVIC8835_RS03900 WP_086255311.1 729178..729549(+) (dprB) [Campylobacter vicugnae strain RM8835]
ATGATAGTTGCTATTGATATTGGGCTTAAAAGAATAGGTATGGCAGTAAGTCTAGATGGTAAAATTGCCCTCCCAATTGC
TCCAATTCTTCGTAAGAATCGAAATCAAGCTGCAAAAGATGTGAGTAATGCCCTAAAAGATAGAGAAGCAAAAATATTAG
TAGTTGGTTTGCCAAAAGGTGGAAGCTCTGAGGCTGAGATGGAGCGAAGAATAAAACATTTTATCTCGCTTTTAGATTTT
GATGGTCAGATTTATTATGAGAATGAGGCTTATAGTAGTTTAGAAGCTAGTGATTTAATAGATGATAAAAGAGATGGCAA
GCTTGATAGCGTGGCCGCAATGATAATTTTGGAGAGATTTTTAAAAAGATGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

46.97

100

0.504