Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FTX54_RS16680 Genome accession   NZ_CP144914
Coordinates   3678213..3678731 (-) Length   172 a.a.
NCBI ID   WP_147802539.1    Uniprot ID   A0A5C7FKZ7
Organism   Alkalicoccus halolimnae strain BZ-SZ-XJ29     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3673213..3683731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FTX54_RS16660 (FTX54_016655) rplI 3674208..3674651 (-) 444 WP_147802543.1 50S ribosomal protein L9 -
  FTX54_RS16665 (FTX54_016660) - 3674651..3676618 (-) 1968 WP_147802542.1 DHH family phosphoesterase -
  FTX54_RS16670 (FTX54_016665) - 3676631..3677566 (-) 936 WP_147802541.1 YybS family protein -
  FTX54_RS16675 (FTX54_016670) rpsR 3677941..3678168 (-) 228 WP_147802540.1 30S ribosomal protein S18 -
  FTX54_RS16680 (FTX54_016675) ssbA 3678213..3678731 (-) 519 WP_147802539.1 single-stranded DNA-binding protein Machinery gene
  FTX54_RS16685 (FTX54_016680) rpsF 3678772..3679059 (-) 288 WP_147802538.1 30S ribosomal protein S6 -
  FTX54_RS16690 (FTX54_016685) - 3679274..3680269 (-) 996 WP_338485171.1 LLM class flavin-dependent oxidoreductase -
  FTX54_RS16695 (FTX54_016690) - 3680364..3681029 (+) 666 WP_147802817.1 diphthine--ammonia ligase -
  FTX54_RS16700 (FTX54_016695) ychF 3681227..3682327 (-) 1101 WP_147802536.1 redox-regulated ATPase YchF -
  FTX54_RS16705 (FTX54_016700) - 3682846..3683043 (-) 198 WP_147802535.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18179.82 Da        Isoelectric Point: 4.6010

>NTDB_id=935131 FTX54_RS16680 WP_147802539.1 3678213..3678731(-) (ssbA) [Alkalicoccus halolimnae strain BZ-SZ-XJ29]
MINRVVLVGRLTKDPELRYTANGIAVATFTLAVNRPFSNQQGNREADFINTVVWRKQAENVANYLKKGSMAGVDGRIQTR
SFDNNEGRRIFMTEVVAESVQFLEPRGSSQGGGQQYGDSGQQAPQGGQSGSTGGQGAGSGSASGGFGQGSSNDDPFAGEG
KPIDIDDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=935131 FTX54_RS16680 WP_147802539.1 3678213..3678731(-) (ssbA) [Alkalicoccus halolimnae strain BZ-SZ-XJ29]
ATGATTAACCGCGTTGTTCTAGTTGGACGCTTAACGAAAGACCCGGAGCTGCGTTATACGGCAAACGGCATTGCAGTAGC
GACATTTACGCTTGCAGTCAACCGTCCGTTTTCAAACCAGCAGGGCAATCGTGAAGCTGACTTCATTAATACTGTAGTTT
GGAGAAAGCAGGCGGAAAACGTCGCCAACTACCTGAAAAAAGGAAGCATGGCCGGCGTAGACGGCCGCATCCAGACCCGC
AGCTTCGATAATAACGAAGGCCGTCGTATTTTTATGACAGAAGTAGTAGCCGAGAGCGTTCAGTTTCTGGAACCGCGCGG
GTCTTCCCAGGGCGGAGGCCAGCAGTACGGAGATTCCGGCCAGCAGGCACCTCAAGGGGGCCAGAGCGGCTCCACAGGGG
GGCAGGGCGCCGGTTCCGGATCTGCTTCCGGTGGTTTCGGTCAAGGTTCATCCAACGATGATCCGTTTGCCGGTGAAGGC
AAGCCGATCGATATCGATGATGACGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C7FKZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.006

100

0.634
  ssb Latilactobacillus sakei subsp. sakei 23K

52.571

100

0.535
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.628

0.366