Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   V4Q78_RS16590 Genome accession   NZ_CP144563
Coordinates   3379377..3379787 (-) Length   136 a.a.
NCBI ID   WP_001200131.1    Uniprot ID   A0A0J1A5R4
Organism   Acinetobacter baumannii strain AB5075 isolate grey variant     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3374377..3384787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4Q78_RS16560 (V4Q78_16560) - 3374463..3374732 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  V4Q78_RS16565 (V4Q78_16565) rapZ 3374729..3375580 (-) 852 WP_000821671.1 RNase adapter RapZ -
  V4Q78_RS16570 (V4Q78_16570) panC 3375603..3376451 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  V4Q78_RS16575 (V4Q78_16575) panB 3376455..3377264 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  V4Q78_RS16580 (V4Q78_16580) folK 3377310..3377792 (-) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  V4Q78_RS16585 (V4Q78_16585) pcnB 3377789..3379252 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  V4Q78_RS16590 (V4Q78_16590) comEA 3379377..3379787 (-) 411 WP_001200131.1 ComEA family DNA-binding protein Machinery gene
  V4Q78_RS16595 (V4Q78_16595) mazG 3379756..3380562 (-) 807 WP_000359493.1 nucleoside triphosphate pyrophosphohydrolase -
  V4Q78_RS16600 (V4Q78_16600) - 3380674..3381447 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  V4Q78_RS16605 (V4Q78_16605) - 3381492..3383798 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15650.89 Da        Isoelectric Point: 10.3828

>NTDB_id=934312 V4Q78_RS16590 WP_001200131.1 3379377..3379787(-) (comEA) [Acinetobacter baumannii strain AB5075 isolate grey variant]
MQYSIRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=934312 V4Q78_RS16590 WP_001200131.1 3379377..3379787(-) (comEA) [Acinetobacter baumannii strain AB5075 isolate grey variant]
ATGCAATACAGCATAAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1A5R4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404