Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V4S29_RS00445 Genome accession   NZ_CP144498
Coordinates   83173..83691 (+) Length   172 a.a.
NCBI ID   WP_016250467.1    Uniprot ID   A0A0H2QMK6
Organism   Enterococcus cecorum strain 66     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 78173..88691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4S29_RS00420 (V4S29_00425) - 78718..80322 (-) 1605 WP_347905074.1 IS1182 family transposase -
  V4S29_RS00425 (V4S29_00430) - 80481..81134 (+) 654 Protein_84 MFS transporter -
  V4S29_RS00430 (V4S29_00435) - 81183..81566 (-) 384 WP_347906251.1 hypothetical protein -
  V4S29_RS00435 (V4S29_00440) - 81790..82464 (+) 675 Protein_86 site-specific integrase -
  V4S29_RS00440 (V4S29_00445) rpsF 82831..83130 (+) 300 WP_016250468.1 30S ribosomal protein S6 -
  V4S29_RS00445 (V4S29_00450) ssb 83173..83691 (+) 519 WP_016250467.1 single-stranded DNA-binding protein Machinery gene
  V4S29_RS00450 (V4S29_00455) rpsR 83721..83957 (+) 237 WP_016250466.1 30S ribosomal protein S18 -
  V4S29_RS00455 (V4S29_00460) - 84147..84575 (+) 429 WP_204645766.1 NUDIX hydrolase -
  V4S29_RS00460 (V4S29_00465) - 84960..86411 (+) 1452 WP_347906253.1 DHH family phosphoesterase -
  V4S29_RS00465 (V4S29_00470) rplI 86424..86876 (+) 453 WP_016250461.1 50S ribosomal protein L9 -
  V4S29_RS00470 (V4S29_00475) - 86948..87415 (+) 468 WP_347906255.1 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19042.89 Da        Isoelectric Point: 4.7093

>NTDB_id=934094 V4S29_RS00445 WP_016250467.1 83173..83691(+) (ssb) [Enterococcus cecorum strain 66]
MINNVVLVGRLTRDPDLRYTSSGVAVATFSLAVNRNFTSQNGERETDFINCVIWRKPAETLANYARKGTLIGLTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESKAVNDQRRQAAGNFDNNVSQPFNNNNNSFDQPASSQPFSGMPGFDRDASNTPLGG
SSIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=934094 V4S29_RS00445 WP_016250467.1 83173..83691(+) (ssb) [Enterococcus cecorum strain 66]
TTGATTAATAATGTTGTATTAGTAGGTAGATTAACTAGAGACCCTGATTTACGTTACACTTCTTCTGGTGTTGCGGTGGC
TACTTTTAGTTTAGCTGTGAACCGTAATTTTACTAGCCAAAATGGAGAAAGAGAAACGGATTTTATCAATTGTGTCATTT
GGCGTAAACCAGCTGAAACCTTAGCAAATTACGCTAGAAAAGGGACATTAATTGGTTTGACCGGACGTATTCAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACTGAAGTGGTTGCCGATAATTTCCAATTATTAGAGTCTAAAGC
AGTCAACGATCAACGTCGTCAAGCTGCCGGAAACTTTGATAATAATGTCTCACAACCATTTAACAATAATAACAATAGCT
TTGATCAGCCAGCTTCATCTCAACCATTTAGTGGAATGCCTGGCTTTGACCGTGATGCAAGTAACACACCACTTGGCGGA
TCAAGCATTGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.345

100

0.61
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.409

100

0.547
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.628

0.366