Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V4S27_RS00060 Genome accession   NZ_CP144495
Coordinates   13271..13789 (+) Length   172 a.a.
NCBI ID   WP_016250467.1    Uniprot ID   A0A0H2QMK6
Organism   Enterococcus cecorum strain 70     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 8271..18789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4S27_RS00040 (V4S27_00040) gyrA 8508..11012 (+) 2505 WP_016250471.1 DNA gyrase subunit A -
  V4S27_RS00045 (V4S27_00045) - 11229..11600 (+) 372 WP_016250470.1 MmcQ/YjbR family DNA-binding protein -
  V4S27_RS00050 (V4S27_00050) - 11597..12670 (+) 1074 WP_114975246.1 endonuclease/exonuclease/phosphatase family protein -
  V4S27_RS00055 (V4S27_00055) rpsF 12929..13228 (+) 300 WP_016250468.1 30S ribosomal protein S6 -
  V4S27_RS00060 (V4S27_00060) ssb 13271..13789 (+) 519 WP_016250467.1 single-stranded DNA-binding protein Machinery gene
  V4S27_RS00065 (V4S27_00065) rpsR 13819..14055 (+) 237 WP_016250466.1 30S ribosomal protein S18 -
  V4S27_RS00070 (V4S27_00070) - 14244..14657 (+) 414 WP_016250465.1 NUDIX hydrolase -
  V4S27_RS00075 (V4S27_00075) - 14736..15008 (+) 273 WP_016250464.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19042.89 Da        Isoelectric Point: 4.7093

>NTDB_id=934054 V4S27_RS00060 WP_016250467.1 13271..13789(+) (ssb) [Enterococcus cecorum strain 70]
MINNVVLVGRLTRDPDLRYTSSGVAVATFSLAVNRNFTSQNGERETDFINCVIWRKPAETLANYARKGTLIGLTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESKAVNDQRRQAAGNFDNNVSQPFNNNNNSFDQPASSQPFSGMPGFDRDASNTPLGG
SSIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=934054 V4S27_RS00060 WP_016250467.1 13271..13789(+) (ssb) [Enterococcus cecorum strain 70]
TTGATTAATAATGTTGTATTAGTAGGTAGATTAACAAGAGACCCTGATTTACGTTATACTTCTTCTGGTGTTGCGGTGGC
TACTTTTAGTTTAGCTGTGAACCGTAATTTTACCAGCCAAAATGGAGAAAGAGAAACGGACTTTATCAATTGTGTCATTT
GGCGTAAACCAGCTGAAACCTTAGCAAATTACGCTAGAAAAGGGACATTAATTGGTTTGACCGGACGTATTCAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACTGAAGTGGTTGCCGATAATTTCCAATTATTAGAGTCTAAAGC
AGTCAACGATCAACGTCGTCAAGCTGCCGGAAACTTTGATAATAATGTCTCACAACCATTTAACAATAATAACAATAGCT
TTGATCAGCCAGCTTCATCTCAACCATTTAGTGGAATGCCTGGCTTTGACCGTGATGCAAGTAACACACCACTTGGCGGA
TCAAGCATTGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2QMK6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.345

100

0.61
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.409

100

0.547
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.628

0.366