Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | V4S36_RS00165 | Genome accession | NZ_CP144490 |
| Coordinates | 31057..31575 (+) | Length | 172 a.a. |
| NCBI ID | WP_016250467.1 | Uniprot ID | A0A0H2QMK6 |
| Organism | Enterococcus cecorum strain 127 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2671..64501 | 31057..31575 | within | 0 |
Gene organization within MGE regions
Location: 2671..64501
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V4S36_RS00015 (V4S36_00015) | - | 3061..4272 (+) | 1212 | WP_347943842.1 | MFS transporter | - |
| V4S36_RS00020 (V4S36_00020) | - | 4411..4746 (+) | 336 | WP_347943843.1 | AbrB family transcriptional regulator | - |
| V4S36_RS00025 (V4S36_00025) | yaaA | 5000..5248 (+) | 249 | WP_047334537.1 | S4 domain-containing protein YaaA | - |
| V4S36_RS00030 (V4S36_00030) | recF | 5235..6374 (+) | 1140 | WP_347943844.1 | DNA replication/repair protein RecF | - |
| V4S36_RS00035 (V4S36_00035) | gyrB | 6401..8350 (+) | 1950 | WP_047334535.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| V4S36_RS00040 (V4S36_00040) | gyrA | 8370..10874 (+) | 2505 | WP_347943845.1 | DNA gyrase subunit A | - |
| V4S36_RS00045 (V4S36_00045) | - | 11087..11458 (+) | 372 | WP_347943846.1 | MmcQ/YjbR family DNA-binding protein | - |
| V4S36_RS00050 (V4S36_00050) | - | 11455..12528 (+) | 1074 | WP_347943847.1 | endonuclease/exonuclease/phosphatase family protein | - |
| V4S36_RS00055 (V4S36_00055) | - | 12937..13251 (+) | 315 | WP_000420682.1 | YdcP family protein | - |
| V4S36_RS00060 (V4S36_00060) | - | 13267..13653 (+) | 387 | WP_000985015.1 | YdcP family protein | - |
| V4S36_RS00065 (V4S36_00065) | - | 13682..15067 (+) | 1386 | WP_347943848.1 | FtsK/SpoIIIE domain-containing protein | - |
| V4S36_RS00070 (V4S36_00070) | - | 15070..15221 (+) | 152 | Protein_13 | conjugal transfer protein | - |
| V4S36_RS00075 (V4S36_00075) | mobT | 15244..16449 (+) | 1206 | WP_347943849.1 | MobT family relaxase | - |
| V4S36_RS00080 (V4S36_00080) | - | 16492..16713 (+) | 222 | WP_001009056.1 | hypothetical protein | - |
| V4S36_RS00085 (V4S36_00085) | - | 16830..17327 (+) | 498 | WP_000342539.1 | antirestriction protein ArdA | - |
| V4S36_RS00090 (V4S36_00090) | - | 17416..17808 (+) | 393 | WP_000723888.1 | conjugal transfer protein | - |
| V4S36_RS00095 (V4S36_00095) | - | 17792..20239 (+) | 2448 | WP_006701291.1 | ATP-binding protein | - |
| V4S36_RS00100 (V4S36_00100) | - | 20242..22419 (+) | 2178 | WP_000804748.1 | membrane protein | - |
| V4S36_RS00105 (V4S36_00105) | - | 22416..23297 (+) | 882 | WP_174854705.1 | bifunctional lysozyme/C40 family peptidase | - |
| V4S36_RS00110 (V4S36_00110) | - | 23294..24229 (+) | 936 | WP_001224320.1 | conjugal transfer protein | - |
| V4S36_RS00115 (V4S36_00115) | - | 24474..24590 (+) | 117 | WP_001791010.1 | tetracycline resistance determinant leader peptide | - |
| V4S36_RS00120 (V4S36_00120) | tet(M) | 24606..26525 (+) | 1920 | WP_047339182.1 | tetracycline resistance ribosomal protection protein Tet(M) | - |
| V4S36_RS00125 (V4S36_00125) | - | 26644..26808 (+) | 165 | Protein_24 | cysteine-rich KTR domain-containing protein | - |
| V4S36_RS00130 (V4S36_00130) | - | 26878..27231 (-) | 354 | WP_347943850.1 | helix-turn-helix domain-containing protein | - |
| V4S36_RS00135 (V4S36_00135) | - | 27736..28158 (+) | 423 | WP_000804885.1 | sigma-70 family RNA polymerase sigma factor | - |
| V4S36_RS00140 (V4S36_00140) | - | 28155..28385 (+) | 231 | WP_000857133.1 | helix-turn-helix domain-containing protein | - |
| V4S36_RS00145 (V4S36_00145) | - | 28611..28862 (-) | 252 | WP_001845478.1 | hypothetical protein | - |
| V4S36_RS00150 (V4S36_00150) | - | 28846..29049 (+) | 204 | WP_000814511.1 | excisionase | - |
| V4S36_RS00155 (V4S36_00155) | - | 29131..30348 (+) | 1218 | WP_001291561.1 | tyrosine-type recombinase/integrase | - |
| V4S36_RS00160 (V4S36_00160) | rpsF | 30715..31014 (+) | 300 | WP_016250468.1 | 30S ribosomal protein S6 | - |
| V4S36_RS00165 (V4S36_00165) | ssb | 31057..31575 (+) | 519 | WP_016250467.1 | single-stranded DNA-binding protein | Machinery gene |
| V4S36_RS00170 (V4S36_00170) | rpsR | 31605..31841 (+) | 237 | WP_016250466.1 | 30S ribosomal protein S18 | - |
| V4S36_RS00175 (V4S36_00175) | - | 32029..32457 (+) | 429 | WP_347943851.1 | NUDIX hydrolase | - |
| V4S36_RS00180 (V4S36_00180) | - | 32842..34293 (+) | 1452 | WP_347943853.1 | DHH family phosphoesterase | - |
| V4S36_RS00185 (V4S36_00185) | rplI | 34306..34758 (+) | 453 | WP_016250461.1 | 50S ribosomal protein L9 | - |
| V4S36_RS00190 (V4S36_00190) | - | 34830..35297 (+) | 468 | WP_347943854.1 | NUDIX domain-containing protein | - |
| V4S36_RS00195 (V4S36_00195) | dnaB | 35453..36823 (+) | 1371 | WP_347943855.1 | replicative DNA helicase | - |
| V4S36_RS00200 (V4S36_00200) | - | 37391..39553 (+) | 2163 | WP_347943856.1 | PTS transporter subunit IIBC | - |
| V4S36_RS00205 (V4S36_00205) | - | 39653..40450 (+) | 798 | WP_087402480.1 | endonuclease/exonuclease/phosphatase family protein | - |
| V4S36_RS00210 (V4S36_00210) | - | 40710..42002 (+) | 1293 | WP_047241769.1 | adenylosuccinate synthase | - |
| V4S36_RS00215 (V4S36_00215) | - | 42425..43270 (+) | 846 | WP_171333238.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| V4S36_RS00220 (V4S36_00220) | - | 43542..44744 (-) | 1203 | WP_204644630.1 | MFS transporter | - |
| V4S36_RS00225 (V4S36_00225) | - | 45056..46687 (-) | 1632 | WP_016250453.1 | ATP-binding cassette domain-containing protein | - |
| V4S36_RS00230 (V4S36_00230) | - | 47134..47466 (+) | 333 | WP_016250439.1 | PTS sugar transporter subunit IIB | - |
| V4S36_RS00235 (V4S36_00235) | - | 47486..47848 (+) | 363 | WP_016250438.1 | PTS lactose/cellobiose transporter subunit IIA | - |
| V4S36_RS00240 (V4S36_00240) | - | 47907..48995 (+) | 1089 | WP_347943857.1 | MupG family TIM beta-alpha barrel fold protein | - |
| V4S36_RS00245 (V4S36_00245) | - | 49265..50701 (+) | 1437 | WP_087403300.1 | 6-phospho-beta-glucosidase | - |
| V4S36_RS00250 (V4S36_00250) | - | 50766..51260 (+) | 495 | WP_047241747.1 | hypothetical protein | - |
| V4S36_RS00255 (V4S36_00255) | celB | 51283..52629 (+) | 1347 | WP_347907841.1 | PTS cellobiose transporter subunit IIC | - |
| V4S36_RS00260 (V4S36_00260) | - | 52729..53442 (-) | 714 | WP_087663275.1 | GntR family transcriptional regulator | - |
| V4S36_RS00265 (V4S36_00265) | - | 53623..55104 (+) | 1482 | WP_168931964.1 | family 1 glycosylhydrolase | - |
| V4S36_RS00270 (V4S36_00270) | - | 55151..56398 (-) | 1248 | WP_243188467.1 | glutamate-5-semialdehyde dehydrogenase | - |
| V4S36_RS00275 (V4S36_00275) | proB | 56414..57217 (-) | 804 | WP_243190910.1 | glutamate 5-kinase | - |
| V4S36_RS00280 (V4S36_00280) | - | 57351..57866 (-) | 516 | WP_347906318.1 | Fic family protein | - |
| V4S36_RS00285 (V4S36_00285) | - | 57823..58047 (-) | 225 | WP_347906319.1 | hypothetical protein | - |
| V4S36_RS00290 (V4S36_00290) | - | 58270..58791 (+) | 522 | WP_087213972.1 | dUTP pyrophosphatase | - |
| V4S36_RS00295 (V4S36_00295) | radA | 58804..60174 (+) | 1371 | WP_047333966.1 | DNA repair protein RadA | Machinery gene |
| V4S36_RS00300 (V4S36_00300) | - | 60509..61615 (+) | 1107 | WP_047338892.1 | PIN/TRAM domain-containing protein | - |
| V4S36_RS00305 (V4S36_00305) | - | 61832..62137 (+) | 306 | WP_087663274.1 | hypothetical protein | - |
| V4S36_RS00310 (V4S36_00310) | - | 62193..62681 (+) | 489 | WP_347943858.1 | GNAT family N-acetyltransferase | - |
| V4S36_RS00315 (V4S36_00315) | gltX | 62776..64233 (+) | 1458 | WP_047338895.1 | glutamate--tRNA ligase | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19042.89 Da Isoelectric Point: 4.7093
>NTDB_id=934009 V4S36_RS00165 WP_016250467.1 31057..31575(+) (ssb) [Enterococcus cecorum strain 127]
MINNVVLVGRLTRDPDLRYTSSGVAVATFSLAVNRNFTSQNGERETDFINCVIWRKPAETLANYARKGTLIGLTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESKAVNDQRRQAAGNFDNNVSQPFNNNNNSFDQPASSQPFSGMPGFDRDASNTPLGG
SSIDISDDDLPF
MINNVVLVGRLTRDPDLRYTSSGVAVATFSLAVNRNFTSQNGERETDFINCVIWRKPAETLANYARKGTLIGLTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESKAVNDQRRQAAGNFDNNVSQPFNNNNNSFDQPASSQPFSGMPGFDRDASNTPLGG
SSIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=934009 V4S36_RS00165 WP_016250467.1 31057..31575(+) (ssb) [Enterococcus cecorum strain 127]
TTGATTAATAATGTTGTATTAGTAGGTAGATTAACAAGAGACCCTGATTTACGTTACACTTCTTCTGGTGTTGCGGTGGC
TACTTTTAGTTTAGCTGTGAACCGTAATTTTACCAGCCAAAACGGAGAAAGAGAAACGGACTTTATCAATTGTGTCATTT
GGCGTAAACCAGCTGAAACTTTAGCAAATTACGCTAGAAAAGGGACATTAATTGGTTTGACTGGACGTATTCAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTGTACGTAACTGAAGTGGTTGCCGATAATTTCCAATTATTAGAGTCTAAAGC
AGTCAATGATCAACGTCGTCAAGCTGCCGGAAACTTTGATAATAATGTCTCACAACCATTTAACAATAATAACAATAGCT
TTGATCAGCCAGCTTCATCTCAACCATTTAGTGGAATGCCTGGCTTTGACCGTGATGCAAGTAACACACCACTTGGCGGA
TCAAGCATTGACATTTCAGATGATGATTTACCATTCTAA
TTGATTAATAATGTTGTATTAGTAGGTAGATTAACAAGAGACCCTGATTTACGTTACACTTCTTCTGGTGTTGCGGTGGC
TACTTTTAGTTTAGCTGTGAACCGTAATTTTACCAGCCAAAACGGAGAAAGAGAAACGGACTTTATCAATTGTGTCATTT
GGCGTAAACCAGCTGAAACTTTAGCAAATTACGCTAGAAAAGGGACATTAATTGGTTTGACTGGACGTATTCAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTGTACGTAACTGAAGTGGTTGCCGATAATTTCCAATTATTAGAGTCTAAAGC
AGTCAATGATCAACGTCGTCAAGCTGCCGGAAACTTTGATAATAATGTCTCACAACCATTTAACAATAATAACAATAGCT
TTGATCAGCCAGCTTCATCTCAACCATTTAGTGGAATGCCTGGCTTTGACCGTGATGCAAGTAACACACCACTTGGCGGA
TCAAGCATTGACATTTCAGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.345 |
100 |
0.61 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.409 |
100 |
0.547 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
61.628 |
0.366 |