Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   VZ068_RS16035 Genome accession   NZ_CP144460
Coordinates   3826018..3827412 (+) Length   464 a.a.
NCBI ID   WP_349655856.1    Uniprot ID   A0AAU7P5R0
Organism   Xanthomonas sp. 10-10     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3821018..3832412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZ068_RS16015 (VZ068_16020) - 3821282..3821665 (+) 384 WP_349655854.1 hypothetical protein -
  VZ068_RS16020 (VZ068_16025) sucD 3821747..3822622 (-) 876 WP_047124757.1 succinate--CoA ligase subunit alpha -
  VZ068_RS16025 (VZ068_16030) sucC 3822647..3823816 (-) 1170 WP_016901264.1 ADP-forming succinate--CoA ligase subunit beta -
  VZ068_RS16030 (VZ068_16035) - 3824049..3825662 (+) 1614 WP_349655855.1 HAMP domain-containing sensor histidine kinase -
  VZ068_RS16035 (VZ068_16040) pilR 3826018..3827412 (+) 1395 WP_349655856.1 sigma-54 dependent transcriptional regulator Regulator
  VZ068_RS16040 (VZ068_16045) pilB 3828030..3829766 (-) 1737 WP_259162348.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VZ068_RS16045 (VZ068_16050) - 3829907..3830506 (-) 600 WP_259162349.1 methionine biosynthesis protein MetW -
  VZ068_RS16050 (VZ068_16055) - 3830499..3831539 (-) 1041 WP_349655857.1 glycosyltransferase family 2 protein -
  VZ068_RS16055 (VZ068_16060) - 3831542..3832336 (-) 795 WP_259162353.1 glycosyltransferase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50121.56 Da        Isoelectric Point: 6.5837

>NTDB_id=933961 VZ068_RS16035 WP_349655856.1 3826018..3827412(+) (pilR) [Xanthomonas sp. 10-10]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPAPPPEQASRLLGDSGAMEGLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERNGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAATPGSAA
IEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=933961 VZ068_RS16035 WP_349655856.1 3826018..3827412(+) (pilR) [Xanthomonas sp. 10-10]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAACTGCTGGCCAACAACCCCTACGACCTGTGCCTGA
CCGACATGCGCTTGCCTGACGGCAACGGCATCGAACTGGTCACCGAAATCGCCAAGCATTACCCGCAGACTCCGGTAGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCGGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCCGCGCCGC
CACCGGAGCAGGCCAGTCGCCTGTTGGGCGACTCCGGTGCAATGGAAGGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGTGTGGGCAAGGAACTGGTCGCCCGCACCATCCATGAGCAAGGCGC
CCGTGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCGGCCGAATTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCCCACGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTCCTGGAC
GAAGTGGCCGAACTGCCACTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGTCCGGTCGGCGC
TTCCGGCGAAACGCTGGTGGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TCCGGCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGTTGCGTGAGCGCAACGGCGACCTGCCG
CAACTGGCCGCCGCCATCATCGCGCGCCTGGCGCGCAGCCACGGCCGGCCAATCCCGTTGCTGACCCAATCAGCACTGGA
CGCACTGAATACCTACGGATTTCCGGGCAACGTCCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCAGAAG
ACGACCAGATCAGCGCCAGTGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCGGCCACCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCCGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAATCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGTATCACGTTTCGGGCGT
TGCGTTACAAGCTCAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.696

99.138

0.631
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489