Detailed information NTG0933820

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: VUG52_RS19660
• Genome accession: NZ_CP144367
• Coordinates: 4315017..4317233 (-)
• Length: 738 a.a.
• NCBI ID: WP_331831960.1
• Uniprot ID: -
• Organism: Pseudomonas sp. LH21
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4310017..4322233

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VUG52_RS19625 (VUG52_19625)	murB	4310303..4311322 (-)	1020	WP_050704694.1	UDP-N-acetylmuramate dehydrogenase	-
VUG52_RS19630 (VUG52_19630)	-	4311319..4311783 (-)	465	WP_050704693.1	low molecular weight protein-tyrosine-phosphatase	-
VUG52_RS19635 (VUG52_19635)	kdsB	4311783..4312547 (-)	765	WP_050704692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
VUG52_RS19640 (VUG52_19640)	-	4312544..4312729 (-)	186	WP_011532874.1	Trm112 family protein	-
VUG52_RS19645 (VUG52_19645)	lpxK	4312764..4313768 (-)	1005	WP_331831958.1	tetraacyldisaccharide 4'-kinase	-
VUG52_RS19650 (VUG52_19650)	-	4313768..4314202 (-)	435	WP_110739307.1	biopolymer transporter ExbD	-
VUG52_RS19655 (VUG52_19655)	exbB	4314199..4314834 (-)	636	WP_028690976.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
VUG52_RS19660 (VUG52_19660)	comA	4315017..4317233 (-)	2217	WP_331831960.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
VUG52_RS19665 (VUG52_19665)	-	4317378..4318019 (+)	642	WP_052896362.1	DUF2062 domain-containing protein	-
VUG52_RS19670 (VUG52_19670)	-	4317903..4318682 (-)	780	WP_028690974.1	ABC transporter permease	-
VUG52_RS19675 (VUG52_19675)	-	4318679..4319611 (-)	933	WP_028690973.1	ABC transporter ATP-binding protein	-
VUG52_RS19680 (VUG52_19680)	-	4319744..4320367 (-)	624	WP_331831961.1	glutathione S-transferase	-
VUG52_RS19685 (VUG52_19685)	-	4321112..4321351 (+)	240	WP_186716206.1	hypothetical protein	-
VUG52_RS19690 (VUG52_19690)	-	4321348..4321587 (+)	240	WP_331831967.1	DUF3077 domain-containing protein	-

Sequence

Protein

• Length: 738 a.a.
• Molecular weight: 79944.64 Da
• Isoelectric Point: 11.1941

>NTDB_id=933820 VUG52_RS19660 WP_331831960.1 4315017..4317233(-) (comA) [Pseudomonas sp. LH21]
MRTGMLALVLGLLSLRFLPALPPVGWLIPLLLLALASLRTRAWPLGWWMLGVCWACWSAQQALDDRLPAALDGRTLWLEG
RVVGLPTRTERGVRFELEQPQSRRARLPQRVQLSWFDGPPLRAGEHWRLAVNLRRPQGLLNPYGPDQEATLLARRVGATG
TVKAGTRQGEAASSWRDGLRQRLLTTDAHGRETALAALVLGDGAGLAREDWQVLQATGTVHLLVISGQHIGLLAGLVYGL
VAGLARLGAWPRRLPWLPWACGLAMTAALGYGWLAGFGVPVQRACLMLAVVLLWRLRFRHLGAWVPLLMALSGVLLVEPL
ASLLPGFWLSFAAVTVLVLCFAARLGAWRPWQAWTRAQWVIAVGLLPVLLALGLPVSLSAPLANLLAVPWLSLGVLPLAL
LGTALLPVPGLGEGMLWLAGLSLDGLFAVLTRLAALQPAWIPEPLPLWAWLLVCLGAVLVLLPRGVPLRAPGAVMLLALW
APREQVPPGQVEVWQLDVGQGLAVLLRTRNHALLYDAGPAQGGRDLGETVVLPTLRKLGVKALDVMLISHGHADHAGGAA
AVRRGVPVGRVLAGEVAGLEAASLCRSGERWQWDGVDFELWHWPQGASSNERSCVLRVQANGERLLLAGDMEAGAERAWL
AATDDPRVDWLQAPHHGSRTSSSEPFVQATAPRGVLISRGRHNGFGHPHGQVIERYRRHGVAVRDTAVEGALRLVLGSRG
GVEGVRRERRFWREVDEG

Nucleotide

• Length: 2217 bp

>NTDB_id=933820 VUG52_RS19660 WP_331831960.1 4315017..4317233(-) (comA) [Pseudomonas sp. LH21]
ATGCGCACAGGGATGCTGGCGCTGGTCCTCGGGCTGTTGAGCCTGCGCTTTTTACCTGCCTTGCCACCGGTCGGATGGCT
GATTCCATTGCTGTTGCTGGCTCTGGCCAGCCTGCGTACCCGGGCCTGGCCGCTGGGTTGGTGGATGCTGGGTGTGTGCT
GGGCCTGCTGGTCGGCGCAACAGGCCCTGGACGACCGCCTGCCGGCCGCGCTGGACGGTCGCACGCTGTGGCTGGAGGGG
CGCGTGGTCGGCCTGCCGACCCGTACCGAGCGCGGCGTGCGTTTCGAGCTGGAGCAGCCGCAGTCGCGCCGGGCCCGGTT
GCCCCAACGCGTGCAACTGAGCTGGTTCGACGGGCCGCCGCTGCGGGCGGGGGAGCACTGGCGGCTGGCGGTCAACCTGC
GTCGGCCGCAGGGTCTGCTCAACCCCTATGGCCCCGATCAGGAGGCCACGCTGTTGGCGCGGCGGGTCGGTGCCACCGGC
ACGGTCAAGGCCGGTACGCGCCAGGGCGAGGCGGCCAGCAGTTGGCGCGACGGCCTGCGCCAGCGCTTGCTGACCACCGA
TGCCCATGGCCGGGAGACGGCGTTGGCCGCCTTGGTGCTCGGGGATGGCGCAGGCCTGGCGCGGGAGGACTGGCAGGTGC
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATTTCCGGGCAGCACATCGGCTTGCTGGCCGGATTGGTCTACGGGCTG
GTGGCGGGGCTGGCGCGCCTCGGGGCCTGGCCTCGGCGCCTGCCGTGGCTGCCCTGGGCCTGCGGCCTGGCGATGACAGC
GGCACTGGGTTACGGCTGGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGGGCGTGCCTGATGCTGGCGGTGGTGCTGCTCT
GGCGCTTGCGCTTTCGCCACTTGGGCGCCTGGGTGCCGTTGCTGATGGCGCTGTCGGGCGTGCTGCTGGTCGAGCCGCTG
GCCAGCCTGTTGCCGGGGTTCTGGCTGTCGTTCGCTGCCGTGACGGTGCTGGTGTTGTGCTTCGCCGCCCGGCTGGGCGC
CTGGCGGCCCTGGCAGGCCTGGACCCGCGCCCAGTGGGTGATTGCCGTGGGGTTGTTGCCGGTGCTGCTGGCCTTGGGGC
TGCCCGTCAGCCTCAGTGCGCCGCTGGCCAATCTGCTGGCCGTGCCGTGGCTCAGCCTGGGCGTGCTGCCGCTGGCGTTG
CTGGGCACGGCCCTGTTGCCGGTGCCTGGGCTGGGGGAGGGGATGCTGTGGCTGGCGGGCCTGTCGTTGGACGGCTTGTT
TGCCGTGCTGACGCGATTGGCAGCGCTGCAGCCGGCCTGGATACCCGAGCCGTTGCCGTTGTGGGCCTGGCTGCTGGTGT
GCCTGGGCGCCGTGCTGGTGTTGCTGCCCCGGGGCGTGCCGTTGCGGGCGCCGGGCGCGGTCATGCTGCTGGCGCTGTGG
GCACCACGCGAGCAGGTGCCTCCGGGGCAAGTGGAGGTCTGGCAGCTGGATGTGGGGCAGGGCCTGGCGGTGCTGCTGCG
TACTCGCAATCACGCGCTGCTGTATGACGCAGGTCCGGCTCAGGGTGGCCGTGACCTGGGCGAGACGGTGGTGCTGCCGA
CCTTGCGTAAGCTGGGGGTGAAGGCGCTGGATGTGATGCTGATCAGCCATGGCCATGCCGACCATGCTGGTGGGGCGGCG
GCGGTGCGGCGAGGGGTGCCGGTGGGACGGGTGCTGGCCGGCGAGGTTGCCGGGCTGGAAGCGGCGTCGCTTTGCCGCAG
TGGCGAGCGCTGGCAGTGGGATGGCGTCGATTTCGAGCTTTGGCATTGGCCGCAGGGGGCCTCCAGCAACGAGCGCTCCT
GTGTGTTGCGGGTGCAGGCCAATGGGGAGCGCCTGCTGCTGGCCGGGGACATGGAGGCCGGCGCGGAGCGTGCGTGGCTG
GCCGCGACCGATGATCCTCGGGTGGACTGGTTGCAGGCGCCGCACCATGGCAGCCGCACGTCGTCCAGCGAGCCGTTCGT
CCAGGCCACGGCGCCGCGCGGGGTACTGATTTCCCGAGGGCGGCACAATGGTTTCGGGCATCCCCATGGGCAGGTGATCG
AGCGCTATCGGCGGCATGGGGTGGCGGTGCGTGACACGGCGGTGGAGGGGGCGTTGCGGTTGGTGCTGGGGAGTCGGGGT
GGGGTGGAGGGTGTGCGCAGGGAGCGGCGGTTCTGGCGTGAGGTTGACGAGGGCTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-462)

• Metallo-beta-lactamase superfamily (Lactamase_B) (497-665)

• Domain of unknown function (DUF4131) (DUF4131) (22-166)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	59.944	97.425	0.584
comA	Ralstonia pseudosolanacearum GMI1000	35.28	100	0.409