Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   VUG52_RS19655 Genome accession   NZ_CP144367
Coordinates   4314199..4314834 (-) Length   211 a.a.
NCBI ID   WP_028690976.1    Uniprot ID   A0A4Y8SF72
Organism   Pseudomonas sp. LH21     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4309199..4319834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUG52_RS19625 (VUG52_19625) murB 4310303..4311322 (-) 1020 WP_050704694.1 UDP-N-acetylmuramate dehydrogenase -
  VUG52_RS19630 (VUG52_19630) - 4311319..4311783 (-) 465 WP_050704693.1 low molecular weight protein-tyrosine-phosphatase -
  VUG52_RS19635 (VUG52_19635) kdsB 4311783..4312547 (-) 765 WP_050704692.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VUG52_RS19640 (VUG52_19640) - 4312544..4312729 (-) 186 WP_011532874.1 Trm112 family protein -
  VUG52_RS19645 (VUG52_19645) lpxK 4312764..4313768 (-) 1005 WP_331831958.1 tetraacyldisaccharide 4'-kinase -
  VUG52_RS19650 (VUG52_19650) - 4313768..4314202 (-) 435 WP_110739307.1 biopolymer transporter ExbD -
  VUG52_RS19655 (VUG52_19655) exbB 4314199..4314834 (-) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VUG52_RS19660 (VUG52_19660) comA 4315017..4317233 (-) 2217 WP_331831960.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VUG52_RS19665 (VUG52_19665) - 4317378..4318019 (+) 642 WP_052896362.1 DUF2062 domain-containing protein -
  VUG52_RS19670 (VUG52_19670) - 4317903..4318682 (-) 780 WP_028690974.1 ABC transporter permease -
  VUG52_RS19675 (VUG52_19675) - 4318679..4319611 (-) 933 WP_028690973.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=933819 VUG52_RS19655 WP_028690976.1 4314199..4314834(-) (exbB) [Pseudomonas sp. LH21]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=933819 VUG52_RS19655 WP_028690976.1 4314199..4314834(-) (exbB) [Pseudomonas sp. LH21]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATCCTGAGCTCCATCGCCGCCATGGCGATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGACTCGCCGCTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCGCGCCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCCTCGCGGGTCATCCACGAGCTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTCCTGGCCGGGGGGATCTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGTTGGTGGAAGTGCTGCAGGGTGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y8SF72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829