Detailed information NTG0933239

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: VY732_RS25300
• Genome accession: NZ_CP144274
• Coordinates: 5704596..5705942 (+)
• Length: 448 a.a.
• NCBI ID: WP_116029796.1
• Uniprot ID: -
• Organism: Pseudomonas sp. ZY71
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5699596..5710942

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VY732_RS25275 (VY732_25275)	pgeF	5699802..5700524 (-)	723	WP_123593217.1	peptidoglycan editing factor PgeF	-
VY732_RS25280 (VY732_25280)	rluD	5700521..5701483 (-)	963	WP_034153865.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
VY732_RS25285 (VY732_25285)	-	5701635..5702651 (+)	1017	WP_077574589.1	outer membrane protein assembly factor BamD	-
VY732_RS25290 (VY732_25290)	-	5702778..5703020 (+)	243	WP_077574590.1	PP0621 family protein	-
VY732_RS25295 (VY732_25295)	pilS	5703010..5704599 (+)	1590	WP_331695896.1	ATP-binding protein	Regulator
VY732_RS25300 (VY732_25300)	pilR	5704596..5705942 (+)	1347	WP_116029796.1	sigma-54 dependent transcriptional regulator	Regulator
VY732_RS25305 (VY732_25305)	thiO	5706057..5707157 (-)	1101	WP_331692367.1	glycine oxidase ThiO	-
VY732_RS25310 (VY732_25310)	-	5707215..5707616 (-)	402	WP_034153860.1	type IV pilin protein	-
VY732_RS25315 (VY732_25315)	-	5707632..5710715 (-)	3084	WP_331692368.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50050.33 Da
• Isoelectric Point: 6.5156

>NTDB_id=933239 VY732_RS25300 WP_116029796.1 5704596..5705942(+) (pilR) [Pseudomonas sp. ZY71]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTYSARNLAEAQALLNRENFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGAALRMPAAGGSFTSIDRRLLGDSPPMRSLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGALADKPGLFQAANGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQESVVDVRILCATHKDLDAEVATERFRQDLYYRLNVIELRVPSLRERRDDIEVLA
ANMLKRLAKDTGQPPARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSDGNCAAEGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=933239 VY732_RS25300 WP_116029796.1 5704596..5705942(+) (pilR) [Pseudomonas sp. ZY71]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTACAGCGCGCGCAATCTGGCTGAAGCCCAGGCACTGTTGAACCGCGAGAACTTCGACCTGT
GCCTGACAGACATGCGCTTGCCCGACGGTACAGGGCTGGAGTTGGTGCAGCATATTCAGCAACGTTATCCACAACTGCCG
GTGGCGATGATCACCGCCTACGGCAGTCTGGAAACTGCGATCAACGCCTTGAAAGCCGGGGCTTTCGACTTCCTGACCAA
ACCGGTCGACCTCACCCGCCTGCGCGAACTGGTCGGCGCCGCCCTGCGCATGCCGGCGGCAGGCGGCAGCTTTACATCGA
TTGATCGACGCTTGCTGGGCGACTCGCCACCGATGCGCAGTCTGCGCAAGCAAATCGACAAACTCGCCCGCAGCCAGGCA
CCGGTCTACATCAGCGGCGAATCGGGCAGCGGCAAGGAACTGGTCGCACGGCTGATTCATGAACAAGGGCCACGCGCAAG
CCAACCCTTTGTGCCGGTCAACTGCGGAGCGATCCCGTCGGAGCTGATGGAAAGCGAGTTTTTCGGTCATCGCAAAGGCA
GTTTCACTGGCGCGCTCGCAGACAAGCCCGGGCTGTTTCAGGCGGCCAATGGCGGCACGCTGTTTCTCGATGAAGTGGCG
GACTTGCCGTTGTCGATGCAAGTCAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGTGTCGGCGGCCAGCAGGA
AAGCGTGGTCGATGTGCGGATTCTCTGCGCCACGCACAAGGATCTTGATGCAGAGGTCGCGACCGAACGCTTTCGTCAGG
ACCTTTATTACCGCTTGAACGTGATTGAACTGCGCGTGCCGTCACTGCGCGAAAGGCGTGATGACATTGAAGTGCTGGCG
GCCAATATGCTCAAGCGTCTGGCCAAGGACACCGGCCAACCGCCAGCACGACTACATCCGCAGGCGCTGGAAGCATTGAA
GAACTACCGGTTTCCGGGAAATGTTCGGGAGTTGGAGAACGTTCTCGAACGGGCGCACACCTTGTGTGAAAACCGCACGA
TTGAGGCCGAAGACTTGCGCCTGAGTGACGGCAATTGCGCGGCGGAGGGCGGGATTGCCGATCTGACGCAGATCGATAAT
CTGGAGGATTATCTGGAGAACGTCGAGAGAAAGCTGATCCTGCAGGCGCTGGAGGAAACGCGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGTCTTTCGTTCAGGTCGATGCGTTATCGGCTGAAAAAATTAGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.458	98.884	0.786
pilR	Acinetobacter baumannii strain A118	48.584	100	0.498