Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   VY732_RS25295 Genome accession   NZ_CP144274
Coordinates   5703010..5704599 (+) Length   529 a.a.
NCBI ID   WP_331695896.1    Uniprot ID   -
Organism   Pseudomonas sp. ZY71     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5698010..5709599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VY732_RS25275 (VY732_25275) pgeF 5699802..5700524 (-) 723 WP_123593217.1 peptidoglycan editing factor PgeF -
  VY732_RS25280 (VY732_25280) rluD 5700521..5701483 (-) 963 WP_034153865.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VY732_RS25285 (VY732_25285) - 5701635..5702651 (+) 1017 WP_077574589.1 outer membrane protein assembly factor BamD -
  VY732_RS25290 (VY732_25290) - 5702778..5703020 (+) 243 WP_077574590.1 PP0621 family protein -
  VY732_RS25295 (VY732_25295) pilS 5703010..5704599 (+) 1590 WP_331695896.1 ATP-binding protein Regulator
  VY732_RS25300 (VY732_25300) pilR 5704596..5705942 (+) 1347 WP_116029796.1 sigma-54 dependent transcriptional regulator Regulator
  VY732_RS25305 (VY732_25305) thiO 5706057..5707157 (-) 1101 WP_331692367.1 glycine oxidase ThiO -
  VY732_RS25310 (VY732_25310) - 5707215..5707616 (-) 402 WP_034153860.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58491.97 Da        Isoelectric Point: 6.2725

>NTDB_id=933238 VY732_RS25295 WP_331695896.1 5703010..5704599(+) (pilS) [Pseudomonas sp. ZY71]
MIAEATSADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDELLRGGSWLYLILNILLVVFLENTRRPAQLF
SLALVDVLLLCVLFFAAGGVGSALGNLLIVSVAISNTLLRRRIGLLIAAIGALGIVGSSFLLGFNHPLSANEYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEERRVQLANHSAQTLLAQSHLQGHLID
DYSPALVDRLQLWMNNPTLRPQSLKVPGNGLELQPSFIALEQSPNQQTLVFLEDLAQIAQQAQQLKLAALGHLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVAESREQASER
QQIHLRINSGDFTTLMDPNQLTQILDNLLRNGWRHSALLHDQAEVWLALFSDPDSQLAVLEVQDNGPGVPADEQTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFQSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=933238 VY732_RS25295 WP_331695896.1 5703010..5704599(+) (pilS) [Pseudomonas sp. ZY71]
GTGATCGCTGAGGCCACCAGCGCCGACAGCAAACAGGCGCAGCGCCTGCTGCGCCTTTATCATCTCTACCGTTTAAGTGT
CGGCATCACTCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGATGAATTGCTGCGCG
GCGGCAGTTGGCTGTACCTGATTCTCAACATTCTGTTGGTGGTATTCCTCGAGAACACCCGACGGCCGGCGCAACTGTTC
AGTCTGGCCCTCGTTGATGTCCTGCTTTTATGCGTTCTGTTCTTTGCGGCGGGCGGCGTCGGCAGTGCGCTGGGCAATCT
GCTGATTGTCTCGGTGGCGATCAGCAACACTTTGCTACGGCGACGCATCGGCCTGTTGATCGCCGCCATCGGTGCGCTGG
GCATCGTCGGTTCGAGTTTCCTGCTGGGTTTCAACCACCCCCTCAGCGCCAATGAATACCTGCAAGCCGGCACTCTCGGC
GCCCTGTGTTTTGCCGCGTCGTTGCTGGTGCAGGGGTTGATTCGGCGCCTCGAAGTCAGCGAAACACTGGCCGAGCAACG
CGCCAGCGAAGTGGTCAGCCTCGAAGCCCTCAATGCGCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTCCTCGACG
AGGAGCGTCGGGTGCAACTGGCCAACCACAGCGCGCAAACCCTGCTCGCGCAATCGCACCTTCAGGGGCATTTGATCGAT
GATTATTCGCCGGCGCTGGTTGATCGCCTGCAACTGTGGATGAACAACCCGACCCTGCGCCCGCAGAGCCTGAAAGTCCC
CGGTAATGGCCTGGAACTGCAACCGAGCTTCATCGCCCTCGAACAGAGCCCCAACCAGCAAACCCTGGTATTTCTCGAAG
ACCTCGCGCAGATCGCCCAACAAGCCCAGCAATTGAAACTTGCCGCACTTGGACACTTGACCGCCGGTATCTCCCACGAG
ATCCGCAATCCACTGGGTGCCATCAGTCACGCCGCGCAGCTATTGGCTGAATCCGAGGAACTCGACAGCGCCGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AGAGCGCGCCACAACGGCTGGATCTCAAGCCGTGGCTGGAAAACTTCGTCGCCGAAAGCCGCGAACAGGCCAGCGAGCGC
CAGCAGATTCATCTGCGAATCAATTCAGGGGACTTCACCACGCTGATGGACCCCAATCAGCTCACGCAAATTCTCGACAA
TCTGTTACGCAATGGCTGGCGCCACAGCGCCCTGCTGCATGATCAAGCCGAAGTCTGGCTGGCCCTGTTCAGCGATCCCG
ACAGCCAATTGGCGGTGCTCGAAGTGCAGGACAACGGCCCCGGCGTGCCTGCCGATGAACAGACGCATCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAAGCGCGCCT
AGACTTTCAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(310-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.434

100

0.595