Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACDW37_RS02040 Genome accession   NZ_CP167985
Coordinates   433086..433451 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain 0502d1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 428086..438451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDW37_RS02010 (ACDW37_02010) pyrR 428708..429220 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  ACDW37_RS02015 (ACDW37_02015) ruvX 429332..429766 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  ACDW37_RS02020 (ACDW37_02020) - 429766..430335 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  ACDW37_RS02025 (ACDW37_02025) - 430384..431277 (-) 894 WP_023518289.1 energy transducer TonB -
  ACDW37_RS02030 (ACDW37_02030) gshB 431424..432377 (-) 954 WP_023518290.1 glutathione synthase -
  ACDW37_RS02035 (ACDW37_02035) pilG 432632..433039 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  ACDW37_RS02040 (ACDW37_02040) pilH 433086..433451 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  ACDW37_RS02045 (ACDW37_02045) - 433502..434038 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  ACDW37_RS02050 (ACDW37_02050) pilJ 434123..436171 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  ACDW37_RS02055 (ACDW37_02055) pilK 436232..437107 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=933238 ACDW37_RS02040 WP_003084587.1 433086..433451(+) (pilH) [Pseudomonas aeruginosa strain 0502d1]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=933238 ACDW37_RS02040 WP_003084587.1 433086..433451(+) (pilH) [Pseudomonas aeruginosa strain 0502d1]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364