Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VY732_RS21830 Genome accession   NZ_CP144274
Coordinates   4928423..4930657 (-) Length   744 a.a.
NCBI ID   WP_331691741.1    Uniprot ID   -
Organism   Pseudomonas sp. ZY71     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4923423..4935657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VY732_RS21795 (VY732_21795) murB 4923803..4924822 (-) 1020 WP_331691739.1 UDP-N-acetylmuramate dehydrogenase -
  VY732_RS21800 (VY732_21800) - 4924819..4925283 (-) 465 WP_102900035.1 low molecular weight protein-tyrosine-phosphatase -
  VY732_RS21805 (VY732_21805) kdsB 4925283..4926047 (-) 765 WP_077574085.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VY732_RS21810 (VY732_21810) - 4926044..4926229 (-) 186 WP_011060103.1 Trm112 family protein -
  VY732_RS21815 (VY732_21815) lpxK 4926251..4927261 (-) 1011 WP_331691740.1 tetraacyldisaccharide 4'-kinase -
  VY732_RS21820 (VY732_21820) - 4927261..4927689 (-) 429 WP_007908223.1 biopolymer transporter ExbD -
  VY732_RS21825 (VY732_21825) exbB 4927686..4928321 (-) 636 WP_038364506.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VY732_RS21830 (VY732_21830) comA 4928423..4930657 (-) 2235 WP_331691741.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VY732_RS21835 (VY732_21835) - 4930794..4931312 (+) 519 WP_007908202.1 DUF2062 domain-containing protein -
  VY732_RS21840 (VY732_21840) - 4931455..4932234 (-) 780 WP_008087860.1 ABC transporter permease -
  VY732_RS21845 (VY732_21845) - 4932231..4933163 (-) 933 WP_077574089.1 ABC transporter ATP-binding protein -
  VY732_RS21850 (VY732_21850) - 4933287..4933910 (-) 624 WP_077574090.1 glutathione S-transferase -
  VY732_RS21855 (VY732_21855) - 4933954..4934613 (-) 660 WP_077574091.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 81659.76 Da        Isoelectric Point: 9.9888

>NTDB_id=933232 VY732_RS21830 WP_331691741.1 4928423..4930657(-) (comA) [Pseudomonas sp. ZY71]
MRTGMMALAVGLLAAVFMPALPPVWLLLLLPVAALMLLPFRSYPLAFLLFGFSWASVGAQWALNDRLPTELDGETRWLEG
QVVGLPQSAEGVVRFELADARSRHEKLPSLMRLAWYAGPPVNSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLSDARWAWRDSIRQRLLAVDAHGRAGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAAVMYWL
VAGLARFGLWPLRWPWLPWACGLAFAAAFGYGLLAGFDVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALNLPISLSGPLANLLAVPWVSLVVLPPAL
LGTVLLPVPYVGAGLLWLAGGLIDGLFRALAMIAGHWPAWIAPSLPAWVWAIGSLGAVLLLLPRGVPMRALGWPLLLLLA
MPPRERLAEGLADIWQLDVGQGLAILIRTRHHSLLYDAGPRFGDFDLGERVVLPALRKLSVGDLDLMLLSHADADHAGGA
LAIMRGLTIAQVISGDPAPLPAQLGAEACESGRQWQWDGVRFQLWQWADAGDSNQRSCVLQIEANGERLLLTGDIDTHAE
RSLLDSPLAVPTQWLQAPHHGSRSSSSMALLNVLKPESVLISRGHGNSFGHPHPTVLARYRKQGLHIYDSAEHGAIHLQL
GRFKPPWTMRQQRRFWRDTPALAR

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=933232 VY732_RS21830 WP_331691741.1 4928423..4930657(-) (comA) [Pseudomonas sp. ZY71]
ATGCGCACAGGGATGATGGCGCTTGCAGTCGGTCTGCTCGCCGCGGTTTTTATGCCGGCATTACCGCCGGTCTGGTTGCT
GCTGTTGCTGCCGGTGGCGGCTTTGATGCTGCTGCCGTTTCGCAGCTATCCGTTGGCGTTTTTGCTGTTTGGCTTCTCGT
GGGCCAGCGTCGGTGCGCAATGGGCGTTGAATGATCGTTTGCCGACTGAACTGGATGGCGAAACCCGCTGGCTCGAAGGG
CAGGTCGTCGGCTTGCCGCAGAGCGCCGAGGGTGTGGTGCGTTTCGAGCTGGCGGATGCGCGCTCGCGTCATGAAAAGCT
GCCATCGCTGATGCGCCTCGCCTGGTACGCCGGGCCGCCGGTCAACAGTGGCGAGCGCTGGCGCTTGGCGGTCAAGCTCA
AGCGTCCCGGTGGTTTGCTCAACCCGGACGCTTTCGATTACGAGGCTTGGCTGCTGGCGCAACGCATCGGTGCGACGGGC
ACGATCAAGGATGGTCAACGTCTGAGCGATGCGCGTTGGGCCTGGCGCGACAGCATTCGTCAGCGCTTGCTTGCAGTGGA
TGCGCACGGTCGGGCCGGTGCTCTGGCCGCGTTGGTGTTGGGCGATGGATCCGGGCTCAGTCGTGAGGATTGGCAGATTC
TGCAGGACACCGGCACCGTGCACTTGTTGGTGATTTCCGGCCAGCACATCGGCTTGCTGGCGGCTGTTATGTATTGGCTG
GTCGCAGGGTTGGCGCGATTTGGCCTGTGGCCATTGCGTTGGCCGTGGCTGCCATGGGCCTGTGGGCTGGCGTTCGCGGC
AGCGTTTGGTTATGGCCTGCTTGCCGGGTTCGATGTGCCGGTGCAGCGGGCCTGCGTGATGGTCGGGCTGGTGCTGTTGT
GGCGGCTGCGCTTTCGCCATCTGGGGGCATGGTGGCCGTTGCTGCTGGCGTTCAATGGTGTGCTGTTGCTGGATCCGCTT
GCCAGTTTGCGTCCAGGTTTTTGGCTCTCGTTTGCGGCGGTGGCCGTGCTGATCTTTACTTTTGGCGGTCGTTTGGGCGC
GTGGCGCTGGTGGCAGACCTGGACGCGGGCGCAATGGTTGATCGCGATCGGCTTGTGCCCGGTGTTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTCGCAGTGCCCTGGGTCAGTCTTGTGGTGTTACCGCCGGCGCTA
CTGGGGACGGTGTTGTTGCCTGTTCCTTATGTCGGCGCCGGCCTGCTGTGGCTGGCCGGCGGTTTGATCGACGGACTGTT
TCGCGCGCTGGCAATGATTGCCGGGCATTGGCCGGCGTGGATCGCACCCTCGCTACCCGCTTGGGTCTGGGCCATTGGCA
GCCTCGGCGCCGTGTTGTTGCTGTTGCCGCGCGGCGTGCCGATGCGTGCACTGGGCTGGCCACTGTTGTTGCTGCTGGCC
ATGCCACCCCGCGAGCGATTGGCCGAAGGCCTGGCCGATATCTGGCAGCTCGATGTTGGCCAAGGCCTGGCAATCCTGAT
CCGTACCCGCCATCACTCGCTGTTGTATGACGCGGGGCCACGCTTTGGCGATTTCGATCTCGGCGAACGGGTGGTGTTGC
CCGCGTTGCGCAAACTCAGCGTGGGAGACCTCGATCTGATGCTGCTCAGCCATGCGGACGCCGATCACGCGGGTGGTGCG
CTGGCGATCATGCGCGGTTTGACCATTGCGCAAGTGATCAGCGGCGATCCGGCGCCACTGCCCGCGCAATTGGGCGCCGA
AGCCTGCGAAAGCGGCCGGCAATGGCAGTGGGACGGCGTGCGTTTTCAACTCTGGCAGTGGGCGGACGCCGGCGACAGCA
ATCAGCGTTCGTGCGTATTGCAGATCGAGGCCAATGGCGAGCGCCTGTTGCTGACTGGCGATATCGACACCCACGCCGAA
CGCTCGCTGCTCGACAGTCCGCTGGCCGTGCCGACGCAATGGCTGCAAGCGCCTCACCATGGCAGTCGCAGTTCGTCGTC
GATGGCGCTGCTCAACGTCTTGAAGCCTGAGTCCGTGCTGATTTCGCGAGGTCATGGCAATTCATTTGGTCATCCCCACC
CGACCGTGCTGGCGCGTTATCGCAAACAAGGCCTGCACATTTACGACAGCGCCGAACACGGCGCCATTCATCTGCAATTG
GGCCGCTTCAAGCCGCCGTGGACGATGCGTCAACAGCGGCGTTTCTGGCGCGATACGCCTGCGCTCGCCCGTTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.622

96.371

0.603
  comA Ralstonia pseudosolanacearum GMI1000

32.36

100

0.372