Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   VY732_RS21825 Genome accession   NZ_CP144274
Coordinates   4927686..4928321 (-) Length   211 a.a.
NCBI ID   WP_038364506.1    Uniprot ID   A0A5E6X0Z4
Organism   Pseudomonas sp. ZY71     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4922686..4933321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VY732_RS21790 (VY732_21790) - 4923020..4923490 (-) 471 WP_077574083.1 (2Fe-2S)-binding protein -
  VY732_RS21795 (VY732_21795) murB 4923803..4924822 (-) 1020 WP_331691739.1 UDP-N-acetylmuramate dehydrogenase -
  VY732_RS21800 (VY732_21800) - 4924819..4925283 (-) 465 WP_102900035.1 low molecular weight protein-tyrosine-phosphatase -
  VY732_RS21805 (VY732_21805) kdsB 4925283..4926047 (-) 765 WP_077574085.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VY732_RS21810 (VY732_21810) - 4926044..4926229 (-) 186 WP_011060103.1 Trm112 family protein -
  VY732_RS21815 (VY732_21815) lpxK 4926251..4927261 (-) 1011 WP_331691740.1 tetraacyldisaccharide 4'-kinase -
  VY732_RS21820 (VY732_21820) - 4927261..4927689 (-) 429 WP_007908223.1 biopolymer transporter ExbD -
  VY732_RS21825 (VY732_21825) exbB 4927686..4928321 (-) 636 WP_038364506.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VY732_RS21830 (VY732_21830) comA 4928423..4930657 (-) 2235 WP_331691741.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VY732_RS21835 (VY732_21835) - 4930794..4931312 (+) 519 WP_007908202.1 DUF2062 domain-containing protein -
  VY732_RS21840 (VY732_21840) - 4931455..4932234 (-) 780 WP_008087860.1 ABC transporter permease -
  VY732_RS21845 (VY732_21845) - 4932231..4933163 (-) 933 WP_077574089.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22971.10 Da        Isoelectric Point: 6.8771

>NTDB_id=933231 VY732_RS21825 WP_038364506.1 4927686..4928321(-) (exbB) [Pseudomonas sp. ZY71]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=933231 VY732_RS21825 WP_038364506.1 4927686..4928321(-) (exbB) [Pseudomonas sp. ZY71]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCGGCCATGGCGATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAACTAAAGGAATTGCGCGCCAATTCGCCGCTGGGAGAAATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAGGCCGCCGCCCGGGTCATTCACGAACTCGAGCGCTACGT
TAACGCGCTGGGCACCATTGCCGCCATGTCGCCGTTGCTCGGTCTGCTGGGCACCGTGTTAGGCATGATCGACATTTTCA
GTGCCTTCACTGGCTCAGGCATGACCACCAACGCCTCGGTATTGGCCGGTGGTATTTCCAAAGCGCTGATCACCACCGCT
GCGGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTTCACCGGTTCCTGCAACGCCGCATCGATGAACTGGTGGTCGGTAT
GGAACAGGAAGCGATCAAACTGGTTGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGAGGGCCGGGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E6X0Z4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844