Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RG835_RS06395 Genome accession   NZ_CP144273
Coordinates   992526..993038 (-) Length   170 a.a.
NCBI ID   WP_002288368.1    Uniprot ID   -
Organism   Enterococcus faecium strain SRR12-v1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 987526..998038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG835_RS06375 (RG835_06375) dnaB 988049..989416 (-) 1368 WP_002288373.1 replicative DNA helicase -
  RG835_RS06380 (RG835_06380) rplI 989690..990142 (-) 453 WP_002288372.1 50S ribosomal protein L9 -
  RG835_RS06385 (RG835_06385) - 990148..992121 (-) 1974 WP_002288371.1 DHH family phosphoesterase -
  RG835_RS06390 (RG835_06390) rpsR 992264..992500 (-) 237 WP_002288370.1 30S ribosomal protein S18 -
  RG835_RS06395 (RG835_06395) ssb 992526..993038 (-) 513 WP_002288368.1 single-stranded DNA-binding protein Machinery gene
  RG835_RS06400 (RG835_06400) rpsF 993088..993387 (-) 300 WP_002288366.1 30S ribosomal protein S6 -
  RG835_RS06405 (RG835_06405) gyrA 993623..996094 (-) 2472 WP_002321575.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18451.99 Da        Isoelectric Point: 4.6742

>NTDB_id=933194 RG835_RS06395 WP_002288368.1 992526..993038(-) (ssb) [Enterococcus faecium strain SRR12-v1]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=933194 RG835_RS06395 WP_002288368.1 992526..993038(-) (ssb) [Enterococcus faecium strain SRR12-v1]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.353

0.388