Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   V3O05_RS01580 Genome accession   NZ_CP144249
Coordinates   338166..338639 (+) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain YFY24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333166..343639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3O05_RS01555 (V3O05_01555) - 333630..335735 (-) 2106 WP_001117590.1 HD domain-containing protein -
  V3O05_RS01560 (V3O05_01560) - 335775..335904 (-) 130 Protein_298 hypothetical protein -
  V3O05_RS01565 (V3O05_01565) rpoZ 335943..336221 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  V3O05_RS01570 (V3O05_01570) gmk 336294..336923 (-) 630 WP_000015937.1 guanylate kinase -
  V3O05_RS01575 (V3O05_01575) ispH 337046..337996 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  V3O05_RS01580 (V3O05_01580) fimU 338166..338639 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  V3O05_RS01585 (V3O05_01585) pilV 338633..339193 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  V3O05_RS01590 (V3O05_01590) pilW 339194..340195 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  V3O05_RS01595 (V3O05_01595) pilX 340192..341010 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=932927 V3O05_RS01580 WP_001214061.1 338166..338639(+) (fimU) [Acinetobacter baumannii strain YFY24]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=932927 V3O05_RS01580 WP_001214061.1 338166..338639(+) (fimU) [Acinetobacter baumannii strain YFY24]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987