Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   VX159_RS12675 Genome accession   NZ_CP144212
Coordinates   2789867..2791225 (-) Length   452 a.a.
NCBI ID   WP_371323254.1    Uniprot ID   -
Organism   Dechloromonas sp. ZY10     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2784867..2796225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VX159_RS12655 (VX159_12640) - 2785771..2787615 (+) 1845 WP_371323250.1 phosphoenolpyruvate carboxykinase (GTP) -
  VX159_RS12660 (VX159_12645) speD 2787699..2788100 (+) 402 WP_371323251.1 adenosylmethionine decarboxylase -
  VX159_RS12665 (VX159_12650) - 2788110..2789309 (+) 1200 WP_371323252.1 pyridoxal phosphate-dependent aminotransferase -
  VX159_RS12670 (VX159_12655) ampD 2789280..2789870 (-) 591 WP_371323253.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  VX159_RS12675 (VX159_12660) pilR 2789867..2791225 (-) 1359 WP_371323254.1 sigma-54-dependent transcriptional regulator Regulator
  VX159_RS12680 (VX159_12665) - 2791183..2792787 (-) 1605 WP_371323255.1 PAS domain-containing sensor histidine kinase -
  VX159_RS12685 (VX159_12670) - 2792784..2793002 (-) 219 WP_371323256.1 PP0621 family protein -
  VX159_RS12695 (VX159_12680) ispB 2793168..2794136 (-) 969 WP_371323257.1 octaprenyl diphosphate synthase -
  VX159_RS12700 (VX159_12685) - 2794311..2795420 (+) 1110 WP_371323258.1 HD domain-containing phosphohydrolase -
  VX159_RS12705 (VX159_12690) - 2795417..2796190 (+) 774 WP_371323259.1 ThiF family adenylyltransferase -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49059.29 Da        Isoelectric Point: 5.1051

>NTDB_id=932621 VX159_RS12675 WP_371323254.1 2789867..2791225(-) (pilR) [Dechloromonas sp. ZY10]
MSAARNERSGRQPLSRVLIVDDEADIRELIDLTLSRMGLAAESAGSVAEARAALAAGHFDLCLTDMRLPDGDGLEIVRHI
LECSPRTPVAVITAFGSAENAVAALKAGAFDYLAKPVGLDQLRALVKSALRLPGEAPVGEAEVLLLGHSPAMQQVRETIG
KLARSQAPVYVSGESGSGKELAARQIHALGMRSAAAFVPVNCGAIPENLMESEFFGYRKGAFTGADSDREGFFQAADGGT
LFLDEVADLPLAMQVKLLRAIQEKKVRKVGSVVEEPVDVRIICATHKNLRECVDKGLFRQDLYYRLNVIELHMPSLRERP
EDIPELVAMLLRRQLGEGAPALCQEALALLQRYSFPGNVRELENILERAVALASGERIEAGDLRLDPAGEAGELLPPPER
GSETLDAYLNRLEREAIMEALLHCEGNRTAAARALGVSFRSLRYRLERLGIE

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=932621 VX159_RS12675 WP_371323254.1 2789867..2791225(-) (pilR) [Dechloromonas sp. ZY10]
GTGTCGGCAGCCAGAAACGAACGTAGCGGACGGCAACCGCTGAGCCGGGTTCTCATCGTCGATGACGAGGCGGATATTCG
TGAATTGATTGATCTGACGCTATCGCGAATGGGCTTGGCAGCCGAGTCTGCCGGCAGTGTTGCCGAGGCTCGGGCAGCGC
TGGCGGCCGGACATTTCGATCTTTGCCTTACCGACATGCGCTTGCCTGACGGTGACGGCCTGGAGATCGTCCGCCACATT
CTCGAATGTAGTCCGCGTACGCCGGTGGCCGTGATTACTGCATTCGGCAGCGCCGAAAATGCAGTTGCTGCATTGAAGGC
CGGAGCCTTTGACTATTTGGCCAAGCCGGTCGGGCTCGATCAATTGCGGGCACTGGTCAAGTCGGCTTTGCGTTTGCCCG
GAGAGGCGCCGGTCGGCGAGGCAGAAGTGTTGTTGCTCGGACATTCGCCGGCGATGCAGCAGGTGCGCGAAACCATCGGC
AAACTTGCGCGCAGCCAGGCACCGGTTTACGTTTCCGGCGAGTCGGGTAGCGGCAAGGAATTGGCTGCCCGTCAGATTCA
CGCGCTGGGGATGCGCAGTGCGGCCGCTTTTGTTCCGGTGAATTGCGGCGCCATTCCGGAAAACCTGATGGAAAGCGAAT
TCTTCGGCTATCGGAAAGGAGCTTTTACTGGTGCCGATAGCGATCGCGAGGGGTTTTTCCAGGCTGCTGATGGCGGCACC
CTGTTTCTCGACGAGGTGGCCGATCTCCCCTTGGCCATGCAGGTGAAATTGCTGCGGGCGATACAGGAAAAGAAGGTGCG
CAAGGTTGGTAGCGTGGTTGAAGAGCCGGTCGATGTGCGGATCATTTGTGCAACCCACAAGAACCTTCGCGAGTGCGTCG
ACAAGGGGCTGTTCCGCCAGGACCTCTATTACCGGCTCAACGTGATCGAGTTGCACATGCCGTCCTTGCGCGAGCGCCCC
GAGGATATTCCCGAATTGGTCGCCATGCTGCTGCGGCGGCAGTTGGGCGAAGGGGCTCCGGCCTTGTGTCAGGAAGCTTT
GGCGTTGCTGCAGCGCTATTCCTTTCCCGGCAATGTCCGGGAGCTGGAAAATATTCTTGAACGTGCGGTGGCCCTGGCCA
GCGGCGAACGGATCGAGGCTGGCGACCTGCGTCTCGACCCTGCCGGCGAGGCCGGGGAGTTGTTGCCGCCGCCGGAGCGG
GGGAGCGAGACCCTGGATGCCTACCTCAATCGGCTGGAACGCGAGGCGATCATGGAGGCCTTGTTGCACTGCGAGGGGAA
TCGGACGGCAGCGGCGCGGGCGCTCGGGGTCAGCTTCCGTTCGCTGCGCTACCGTCTCGAACGCCTGGGGATCGAATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(411-448)

Sigma-54 interaction domain (Sigma54_activat)

(145-311)

Response regulator receiver domain (Response_reg)

(17-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

60.449

98.451

0.595
  pilR Acinetobacter baumannii strain A118

46.072

100

0.48
  luxO Vibrio cholerae strain A1552

37.174

100

0.378