Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | MWM03_RS13685 | Genome accession | NZ_AP025625 |
| Coordinates | 2715791..2716090 (-) | Length | 99 a.a. |
| NCBI ID | WP_042408565.1 | Uniprot ID | A0A023DDZ7 |
| Organism | Saccharococcus caldoxylosilyticus strain KH3-5 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2710791..2721090
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MWM03_RS13650 (PcaKH35_26490) | - | 2711502..2713172 (+) | 1671 | WP_033313715.1 | DEAD/DEAH box helicase | - |
| MWM03_RS13655 (PcaKH35_26500) | - | 2713159..2713950 (+) | 792 | WP_017435173.1 | YqhG family protein | - |
| MWM03_RS13660 (PcaKH35_26510) | - | 2713999..2714178 (-) | 180 | WP_017435172.1 | YqzE family protein | - |
| MWM03_RS13665 (PcaKH35_26520) | comGG | 2714229..2714621 (-) | 393 | WP_244380194.1 | competence type IV pilus minor pilin ComGG | - |
| MWM03_RS13670 (PcaKH35_26530) | comGF | 2714638..2715060 (-) | 423 | WP_017435170.1 | competence type IV pilus minor pilin ComGF | - |
| MWM03_RS13675 (PcaKH35_26540) | comGE | 2715057..2715380 (-) | 324 | WP_017435169.1 | competence type IV pilus minor pilin ComGE | - |
| MWM03_RS13680 (PcaKH35_26550) | comGD | 2715364..2715801 (-) | 438 | WP_017435168.1 | competence type IV pilus minor pilin ComGD | - |
| MWM03_RS13685 (PcaKH35_26560) | comGC | 2715791..2716090 (-) | 300 | WP_042408565.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| MWM03_RS13690 (PcaKH35_26570) | comGB | 2716103..2717134 (-) | 1032 | WP_218687286.1 | competence type IV pilus assembly protein ComGB | - |
| MWM03_RS13695 (PcaKH35_26580) | comGA | 2717131..2718195 (-) | 1065 | WP_017435101.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| MWM03_RS13700 (PcaKH35_26590) | - | 2718397..2719092 (+) | 696 | WP_042406218.1 | helix-turn-helix transcriptional regulator | - |
| MWM03_RS13705 (PcaKH35_26600) | - | 2719358..2719600 (+) | 243 | WP_017435099.1 | DUF2626 domain-containing protein | - |
| MWM03_RS13710 (PcaKH35_26610) | - | 2719648..2720784 (-) | 1137 | WP_042406222.1 | class I SAM-dependent methyltransferase | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 10876.69 Da Isoelectric Point: 6.4487
>NTDB_id=93246 MWM03_RS13685 WP_042408565.1 2715791..2716090(-) (comGC) [Saccharococcus caldoxylosilyticus strain KH3-5]
MKNEKGFTLIEMLIVLMVISVLLLIVIPNITKHNGMINNKGCAAFVNTVQAQVKAYEMENNKIPTVQELIDGKYIKSDKC
PNGHSIQINSDGEVSESGT
MKNEKGFTLIEMLIVLMVISVLLLIVIPNITKHNGMINNKGCAAFVNTVQAQVKAYEMENNKIPTVQELIDGKYIKSDKC
PNGHSIQINSDGEVSESGT
Nucleotide
Download Length: 300 bp
>NTDB_id=93246 MWM03_RS13685 WP_042408565.1 2715791..2716090(-) (comGC) [Saccharococcus caldoxylosilyticus strain KH3-5]
ATGAAGAATGAAAAGGGGTTTACGTTAATTGAAATGCTAATCGTATTAATGGTTATTTCTGTCTTATTGTTGATTGTCAT
TCCAAATATAACCAAACATAACGGAATGATTAACAATAAAGGATGCGCGGCGTTTGTCAATACCGTCCAAGCGCAGGTTA
AGGCTTATGAGATGGAGAATAACAAAATTCCTACTGTACAGGAGCTGATCGATGGAAAGTACATTAAGTCGGATAAATGC
CCAAACGGCCACTCCATTCAAATTAATAGCGACGGGGAAGTAAGCGAAAGTGGAACGTGA
ATGAAGAATGAAAAGGGGTTTACGTTAATTGAAATGCTAATCGTATTAATGGTTATTTCTGTCTTATTGTTGATTGTCAT
TCCAAATATAACCAAACATAACGGAATGATTAACAATAAAGGATGCGCGGCGTTTGTCAATACCGTCCAAGCGCAGGTTA
AGGCTTATGAGATGGAGAATAACAAAATTCCTACTGTACAGGAGCTGATCGATGGAAAGTACATTAAGTCGGATAAATGC
CCAAACGGCCACTCCATTCAAATTAATAGCGACGGGGAAGTAAGCGAAAGTGGAACGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
53.191 |
94.949 |
0.505 |
| comGC | Staphylococcus aureus MW2 |
42.268 |
97.98 |
0.414 |
| comGC | Staphylococcus aureus N315 |
42.268 |
97.98 |
0.414 |