Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | MWM03_RS13695 | Genome accession | NZ_AP025625 |
| Coordinates | 2717131..2718195 (-) | Length | 354 a.a. |
| NCBI ID | WP_017435101.1 | Uniprot ID | A0A023DES3 |
| Organism | Saccharococcus caldoxylosilyticus strain KH3-5 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2712131..2723195
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MWM03_RS13655 (PcaKH35_26500) | - | 2713159..2713950 (+) | 792 | WP_017435173.1 | YqhG family protein | - |
| MWM03_RS13660 (PcaKH35_26510) | - | 2713999..2714178 (-) | 180 | WP_017435172.1 | YqzE family protein | - |
| MWM03_RS13665 (PcaKH35_26520) | comGG | 2714229..2714621 (-) | 393 | WP_244380194.1 | competence type IV pilus minor pilin ComGG | - |
| MWM03_RS13670 (PcaKH35_26530) | comGF | 2714638..2715060 (-) | 423 | WP_017435170.1 | competence type IV pilus minor pilin ComGF | - |
| MWM03_RS13675 (PcaKH35_26540) | comGE | 2715057..2715380 (-) | 324 | WP_017435169.1 | competence type IV pilus minor pilin ComGE | - |
| MWM03_RS13680 (PcaKH35_26550) | comGD | 2715364..2715801 (-) | 438 | WP_017435168.1 | competence type IV pilus minor pilin ComGD | - |
| MWM03_RS13685 (PcaKH35_26560) | comGC | 2715791..2716090 (-) | 300 | WP_042408565.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| MWM03_RS13690 (PcaKH35_26570) | comGB | 2716103..2717134 (-) | 1032 | WP_218687286.1 | competence type IV pilus assembly protein ComGB | - |
| MWM03_RS13695 (PcaKH35_26580) | comGA | 2717131..2718195 (-) | 1065 | WP_017435101.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| MWM03_RS13700 (PcaKH35_26590) | - | 2718397..2719092 (+) | 696 | WP_042406218.1 | helix-turn-helix transcriptional regulator | - |
| MWM03_RS13705 (PcaKH35_26600) | - | 2719358..2719600 (+) | 243 | WP_017435099.1 | DUF2626 domain-containing protein | - |
| MWM03_RS13710 (PcaKH35_26610) | - | 2719648..2720784 (-) | 1137 | WP_042406222.1 | class I SAM-dependent methyltransferase | - |
| MWM03_RS13715 (PcaKH35_26620) | - | 2721008..2721640 (-) | 633 | WP_017435097.1 | MBL fold metallo-hydrolase | - |
| MWM03_RS13720 (PcaKH35_26630) | - | 2722087..2722263 (+) | 177 | WP_017435096.1 | DUF2759 domain-containing protein | - |
Sequence
Protein
Download Length: 354 a.a. Molecular weight: 39699.41 Da Isoelectric Point: 8.4019
>NTDB_id=93247 MWM03_RS13695 WP_017435101.1 2717131..2718195(-) (comGA) [Saccharococcus caldoxylosilyticus strain KH3-5]
MNEIEYLADRLLMEAGLLRVSDIHIVPRKNDAVVRFRLDGLLMEKATLTKETCERLITHFKFLAGMDIGERRRPQSGAME
TNQQGEIISLRLSTLPTFYDESLVIRLLPQSFFLPQSQISLFAHSTNILLSLFQQPQGLIICTGPTGSGKTTTLYALLRI
CQEKWHRNVITLEDPVEKRIDNLLQVQINEKAGITYAVGLKAALRHDPDVIMVGEIRDAETAKIAVRSAMTGHLIVSTMH
TKNAVGAIYRLREFGIPLEDIEQTLLAVTAQRLVDLLCPFCGEHCMPVCRQYRKVRRVAVHELLYGSALSDAICSVQTGN
KVCRYYTLENIIRKGMALGFLPAHTLTVVKGGEK
MNEIEYLADRLLMEAGLLRVSDIHIVPRKNDAVVRFRLDGLLMEKATLTKETCERLITHFKFLAGMDIGERRRPQSGAME
TNQQGEIISLRLSTLPTFYDESLVIRLLPQSFFLPQSQISLFAHSTNILLSLFQQPQGLIICTGPTGSGKTTTLYALLRI
CQEKWHRNVITLEDPVEKRIDNLLQVQINEKAGITYAVGLKAALRHDPDVIMVGEIRDAETAKIAVRSAMTGHLIVSTMH
TKNAVGAIYRLREFGIPLEDIEQTLLAVTAQRLVDLLCPFCGEHCMPVCRQYRKVRRVAVHELLYGSALSDAICSVQTGN
KVCRYYTLENIIRKGMALGFLPAHTLTVVKGGEK
Nucleotide
Download Length: 1065 bp
>NTDB_id=93247 MWM03_RS13695 WP_017435101.1 2717131..2718195(-) (comGA) [Saccharococcus caldoxylosilyticus strain KH3-5]
ATGAATGAGATTGAATATTTGGCGGACCGTCTTCTCATGGAAGCAGGGTTGCTTCGCGTCTCGGATATTCATATCGTTCC
GCGGAAGAACGATGCGGTAGTGCGTTTTCGCTTAGATGGACTGCTGATGGAAAAAGCAACGCTGACAAAAGAAACATGCG
AGCGGCTTATTACCCATTTTAAATTTTTAGCAGGCATGGACATTGGCGAACGCCGTCGGCCGCAAAGCGGAGCAATGGAG
ACAAACCAGCAAGGGGAAATCATTTCTTTACGCCTTTCCACATTGCCGACATTCTACGATGAAAGCCTCGTCATCCGGCT
TCTTCCACAAAGTTTTTTCCTGCCACAGTCACAAATTTCCCTATTTGCCCACTCTACCAACATATTGCTTTCCCTGTTTC
AACAGCCGCAAGGATTAATCATTTGTACCGGACCGACCGGATCGGGAAAAACGACGACTTTATATGCCTTGCTGCGGATT
TGCCAGGAAAAGTGGCATCGCAATGTCATCACCTTGGAAGATCCGGTCGAAAAGCGGATTGACAATCTATTGCAAGTGCA
GATTAACGAAAAAGCGGGAATTACGTATGCGGTTGGCTTGAAAGCCGCGTTGCGCCATGATCCGGATGTTATTATGGTCG
GGGAAATCCGCGATGCCGAAACGGCAAAAATTGCGGTGCGCTCTGCCATGACAGGACATTTGATCGTTTCGACGATGCAT
ACGAAAAATGCGGTTGGCGCGATTTACCGTTTGCGCGAATTCGGCATTCCGCTCGAAGATATTGAGCAAACGTTGCTCGC
CGTAACGGCGCAGCGGCTTGTTGATTTGCTCTGTCCGTTTTGCGGTGAACATTGCATGCCCGTTTGCCGCCAATATCGAA
AAGTACGCCGCGTCGCTGTGCATGAACTGCTGTATGGAAGTGCATTATCCGACGCTATTTGCTCCGTGCAAACAGGGAAC
AAAGTATGCCGTTACTATACGTTGGAAAATATCATTCGCAAAGGGATGGCGCTTGGGTTTTTGCCGGCGCACACTCTCAC
GGTCGTTAAGGGAGGGGAAAAATGA
ATGAATGAGATTGAATATTTGGCGGACCGTCTTCTCATGGAAGCAGGGTTGCTTCGCGTCTCGGATATTCATATCGTTCC
GCGGAAGAACGATGCGGTAGTGCGTTTTCGCTTAGATGGACTGCTGATGGAAAAAGCAACGCTGACAAAAGAAACATGCG
AGCGGCTTATTACCCATTTTAAATTTTTAGCAGGCATGGACATTGGCGAACGCCGTCGGCCGCAAAGCGGAGCAATGGAG
ACAAACCAGCAAGGGGAAATCATTTCTTTACGCCTTTCCACATTGCCGACATTCTACGATGAAAGCCTCGTCATCCGGCT
TCTTCCACAAAGTTTTTTCCTGCCACAGTCACAAATTTCCCTATTTGCCCACTCTACCAACATATTGCTTTCCCTGTTTC
AACAGCCGCAAGGATTAATCATTTGTACCGGACCGACCGGATCGGGAAAAACGACGACTTTATATGCCTTGCTGCGGATT
TGCCAGGAAAAGTGGCATCGCAATGTCATCACCTTGGAAGATCCGGTCGAAAAGCGGATTGACAATCTATTGCAAGTGCA
GATTAACGAAAAAGCGGGAATTACGTATGCGGTTGGCTTGAAAGCCGCGTTGCGCCATGATCCGGATGTTATTATGGTCG
GGGAAATCCGCGATGCCGAAACGGCAAAAATTGCGGTGCGCTCTGCCATGACAGGACATTTGATCGTTTCGACGATGCAT
ACGAAAAATGCGGTTGGCGCGATTTACCGTTTGCGCGAATTCGGCATTCCGCTCGAAGATATTGAGCAAACGTTGCTCGC
CGTAACGGCGCAGCGGCTTGTTGATTTGCTCTGTCCGTTTTGCGGTGAACATTGCATGCCCGTTTGCCGCCAATATCGAA
AAGTACGCCGCGTCGCTGTGCATGAACTGCTGTATGGAAGTGCATTATCCGACGCTATTTGCTCCGTGCAAACAGGGAAC
AAAGTATGCCGTTACTATACGTTGGAAAATATCATTCGCAAAGGGATGGCGCTTGGGTTTTTGCCGGCGCACACTCTCAC
GGTCGTTAAGGGAGGGGAAAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
54.971 |
96.61 |
0.531 |
| pilB | Glaesserella parasuis strain SC1401 |
43.729 |
83.333 |
0.364 |