Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   V3D52_RS07230 Genome accession   NZ_CP144123
Coordinates   1611826..1614039 (+) Length   737 a.a.
NCBI ID   WP_338746505.1    Uniprot ID   -
Organism   Pseudomonas putida strain WBB028     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1606826..1619039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3D52_RS07210 (V3D52_07210) - 1608697..1609320 (+) 624 WP_338746503.1 glutathione S-transferase -
  V3D52_RS07215 (V3D52_07215) - 1609453..1610385 (+) 933 WP_016500911.1 ABC transporter ATP-binding protein -
  V3D52_RS07220 (V3D52_07220) - 1610382..1611161 (+) 780 WP_016500910.1 ABC transporter permease -
  V3D52_RS07225 (V3D52_07225) - 1611045..1611683 (-) 639 WP_338746504.1 DUF2062 domain-containing protein -
  V3D52_RS07230 (V3D52_07230) comA 1611826..1614039 (+) 2214 WP_338746505.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V3D52_RS07235 (V3D52_07235) exbB 1614144..1614779 (+) 636 WP_028614013.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V3D52_RS07240 (V3D52_07240) - 1614776..1615210 (+) 435 WP_016500906.1 biopolymer transporter ExbD -
  V3D52_RS07245 (V3D52_07245) lpxK 1615210..1616211 (+) 1002 WP_338746506.1 tetraacyldisaccharide 4'-kinase -
  V3D52_RS07250 (V3D52_07250) - 1616256..1616441 (+) 186 WP_003247142.1 Trm112 family protein -
  V3D52_RS07255 (V3D52_07255) kdsB 1616438..1617202 (+) 765 WP_059395219.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V3D52_RS07260 (V3D52_07260) - 1617202..1617666 (+) 465 WP_338746507.1 low molecular weight protein-tyrosine-phosphatase -
  V3D52_RS07265 (V3D52_07265) murB 1617663..1618682 (+) 1020 WP_338746508.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79532.39 Da        Isoelectric Point: 10.5441

>NTDB_id=932398 V3D52_RS07230 WP_338746505.1 1611826..1614039(+) (comA) [Pseudomonas putida strain WBB028]
MRTGMFALALGLLCLGFLPVLPSVGWLLALAACAVVTLFTRVWPLGCFLLGLCWACWSAQQALDDRLAAGLDGRTLWLEG
RVVGLPARTAQGVRFELEAARSRRAELPQRLQLSWFEGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVTGGWRDVLRHRLLAVEANGRQAALVALVLGDGTGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARLGLWPARLPWLPWACGLAMAAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGATLPLLLALVAVLLVEPL
AALLPGFWLSFTAVATLVYCFSGRLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSMSAPLANLVAVPWVSVAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDGLFRLLALVAQQRPAWVAPALPLWAWLLVSLGALLVLLPRGVPLRGLGGVMLLALW
VPREPVPQGQVEVWQLDVGQGLAVLLRTRHHSLLYDAGPARGESDLGERVVLPTLRKLGVGSLDTMVISHAHADHAGGAA
AIQRGLPVRRLIGGEALDDVPLQPCVNGEQWDWDGVRFSLWRWAAGQSSNDRSCVLLVEAQGERLLLAGDMEAAAERAWL
AEHETPRIDWLQSPHHGSRSSSTEAFIRATAPRGVLISRGRNNSFGHPHVQVMERYQRHGLAVHDTAVEGALRLVLGRQG
DVEGMRGQRRFWRVRAE

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=932398 V3D52_RS07230 WP_338746505.1 1611826..1614039(+) (comA) [Pseudomonas putida strain WBB028]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGCTGTGCCTGGGCTTTCTCCCCGTATTGCCATCGGTCGGATGGCT
GCTGGCGCTTGCTGCGTGCGCTGTCGTCACTCTGTTTACCCGCGTTTGGCCGTTGGGCTGTTTTTTGCTGGGCCTGTGTT
GGGCATGTTGGTCTGCTCAGCAGGCCTTGGATGATCGCCTGGCCGCTGGCCTGGATGGCCGCACCTTGTGGCTGGAGGGG
CGGGTGGTCGGTTTGCCGGCCCGCACGGCGCAAGGTGTGCGCTTCGAGCTGGAGGCTGCGCGCTCGCGGCGGGCCGAACT
GCCGCAACGGTTGCAACTGAGCTGGTTCGAAGGGCCGCCGCTGCGGGCCGGTGAGCAGTGGCGGCTGGCCGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCACATGGGCCGGACCGTGAGGCGCAGCTGCTGGCGCGGCGGGTGGGCGCCACCGGT
ACGGTAAAGGCCGGGCAGCTGCTGGCGCCGGTAACCGGTGGCTGGCGCGATGTGCTGCGCCATCGTTTGCTGGCGGTCGA
AGCCAATGGCCGGCAGGCAGCATTGGTGGCACTGGTGCTTGGCGACGGCACAGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACCTACTGGTGATCTCTGGCCAGCATATCGGCCTGGTGGCCGGTTTGCTGTACGGCCTG
GTCGCCGGACTGGCGCGTTTGGGGCTGTGGCCCGCTCGGTTACCGTGGCTGCCCTGGGCGTGTGGCCTGGCCATGGCGGC
GGCGCTGGCCTACGGCTGGCTGGCCGGTGCCGGTGTGCCGGTGCAGCGTGCCTGCCTGATGCTGGCGGTGGTGCTGCTCT
GGCGCCTGCGCTTTCGCCATCTCGGTGCGACGCTGCCGCTGTTGCTGGCCCTGGTCGCGGTGCTGCTGGTCGAACCACTG
GCAGCGCTGCTGCCTGGGTTCTGGCTGTCATTTACGGCCGTGGCCACGCTTGTCTATTGCTTCAGTGGCCGGCTAGGGGG
CTGGCGGCCCTGGCAGGCCTGGACACGCGCGCAATGGGTGATCGCCATCGGCCTGCTGCCGGTGTTGCTAGCCACGGGCT
TGCCGGTGAGTATGAGTGCGCCGCTGGCCAATCTTGTCGCAGTGCCTTGGGTGAGCGTGGCGGTGCTGCCTTTGGCACTG
CTGGGTACGTTGCTGCTGCCACTGGGCGGGGTAGGGGAGGCTTTGCTTTGGCTGGCGGGTGGCCTGCTGGATGGGCTGTT
CCGGCTGCTGGCGCTGGTGGCGCAGCAGCGTCCGGCGTGGGTGGCGCCGGCCCTGCCATTATGGGCCTGGCTATTGGTGA
GCCTGGGCGCTCTGTTGGTTTTGCTGCCCCGTGGTGTGCCGCTGCGCGGGTTGGGCGGGGTGATGCTGCTGGCCTTGTGG
GTGCCCAGGGAGCCGGTGCCCCAAGGGCAGGTCGAGGTCTGGCAACTGGACGTTGGCCAAGGGCTGGCGGTGCTGTTGCG
CACCCGGCATCACAGCCTGCTGTACGACGCAGGGCCCGCCCGGGGCGAAAGCGACCTGGGGGAGCGGGTGGTGCTACCGA
CGTTGCGCAAGCTGGGGGTGGGCAGCCTGGACACGATGGTGATCAGCCATGCGCATGCCGACCATGCGGGTGGTGCTGCG
GCCATACAGCGCGGTCTGCCGGTCAGGCGGCTGATCGGCGGGGAAGCGCTGGATGATGTGCCATTGCAGCCTTGCGTCAA
TGGCGAACAATGGGACTGGGATGGCGTGCGTTTTTCGTTGTGGCGCTGGGCGGCCGGGCAGAGCAGCAATGACCGTTCCT
GTGTACTGTTGGTAGAGGCACAGGGCGAGCGCTTGCTGCTGGCGGGGGATATGGAAGCTGCTGCTGAACGGGCCTGGCTG
GCGGAGCATGAAACGCCGCGTATCGACTGGTTGCAGTCACCGCACCATGGCAGCCGCAGTTCGTCGACTGAGGCGTTCAT
CCGGGCTACTGCGCCGCGTGGGGTATTGATTTCGCGAGGGCGCAACAATAGCTTCGGGCACCCGCATGTTCAGGTGATGG
AGCGTTATCAGCGGCATGGGCTGGCGGTGCATGACACGGCGGTGGAGGGGGCGTTGCGGTTGGTGTTGGGGCGGCAGGGG
GACGTTGAGGGTATGAGGGGGCAGCGGCGGTTTTGGCGGGTTCGAGCGGAGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.751

98.1

0.586
  comA Ralstonia pseudosolanacearum GMI1000

36.176

100

0.38