Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V3D52_RS07235 Genome accession   NZ_CP144123
Coordinates   1614144..1614779 (+) Length   211 a.a.
NCBI ID   WP_028614013.1    Uniprot ID   A0AAU8S5I2
Organism   Pseudomonas putida strain WBB028     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1609144..1619779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3D52_RS07215 (V3D52_07215) - 1609453..1610385 (+) 933 WP_016500911.1 ABC transporter ATP-binding protein -
  V3D52_RS07220 (V3D52_07220) - 1610382..1611161 (+) 780 WP_016500910.1 ABC transporter permease -
  V3D52_RS07225 (V3D52_07225) - 1611045..1611683 (-) 639 WP_338746504.1 DUF2062 domain-containing protein -
  V3D52_RS07230 (V3D52_07230) comA 1611826..1614039 (+) 2214 WP_338746505.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V3D52_RS07235 (V3D52_07235) exbB 1614144..1614779 (+) 636 WP_028614013.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V3D52_RS07240 (V3D52_07240) - 1614776..1615210 (+) 435 WP_016500906.1 biopolymer transporter ExbD -
  V3D52_RS07245 (V3D52_07245) lpxK 1615210..1616211 (+) 1002 WP_338746506.1 tetraacyldisaccharide 4'-kinase -
  V3D52_RS07250 (V3D52_07250) - 1616256..1616441 (+) 186 WP_003247142.1 Trm112 family protein -
  V3D52_RS07255 (V3D52_07255) kdsB 1616438..1617202 (+) 765 WP_059395219.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V3D52_RS07260 (V3D52_07260) - 1617202..1617666 (+) 465 WP_338746507.1 low molecular weight protein-tyrosine-phosphatase -
  V3D52_RS07265 (V3D52_07265) murB 1617663..1618682 (+) 1020 WP_338746508.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22861.14 Da        Isoelectric Point: 7.3616

>NTDB_id=932399 V3D52_RS07235 WP_028614013.1 1614144..1614779(+) (exbB) [Pseudomonas putida strain WBB028]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANASVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=932399 V3D52_RS07235 WP_028614013.1 1614144..1614779(+) (exbB) [Pseudomonas putida strain WBB028]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCTATTGTCGT
CGAGCGGCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCATTGGGCGAAATCCTTGCCGCAGGCCTGGCCAAT
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATTCACGAACTGGAGCGCTACAT
CAGCACGCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACTGCCAATGCGTCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAACAGGAGGCAATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829