Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   VXF94_RS12655 Genome accession   NZ_CP143956
Coordinates   2486661..2486780 (-) Length   39 a.a.
NCBI ID   WP_014471166.1    Uniprot ID   A0AAP7N737
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 2481661..2491780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS12635 (VXF94_12635) - 2482058..2482489 (+) 432 WP_013353959.1 hypothetical protein -
  VXF94_RS12640 (VXF94_12640) - 2482514..2484586 (-) 2073 WP_013353958.1 transglycosylase domain-containing protein -
  VXF94_RS12645 (VXF94_12645) speE 2484786..2485616 (+) 831 WP_013353957.1 spermidine synthase -
  VXF94_RS12650 (VXF94_12650) speB 2485675..2486547 (+) 873 WP_013353956.1 agmatinase -
  VXF94_RS12655 (VXF94_12655) phrF 2486661..2486780 (-) 120 WP_014471166.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  VXF94_RS12660 (VXF94_12660) rapF 2486764..2487909 (-) 1146 WP_013353955.1 tetratricopeptide repeat protein Regulator
  VXF94_RS12665 (VXF94_12665) - 2488138..2489532 (+) 1395 WP_014471165.1 YncE family protein -
  VXF94_RS12670 (VXF94_12670) - 2489538..2489997 (-) 460 Protein_2448 bacteriocin biosynthesis protein AlbG -
  VXF94_RS12675 (VXF94_12675) - 2490151..2490579 (+) 429 WP_013353951.1 DUF1934 domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4266.10 Da        Isoelectric Point: 8.0195

>NTDB_id=932213 VXF94_RS12655 WP_014471166.1 2486661..2486780(-) (phrF) [Bacillus amyloliquefaciens strain Fad 108]
MKLKYKLVLTCLAVGTVFVSADIASAPEHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=932213 VXF94_RS12655 WP_014471166.1 2486661..2486780(-) (phrF) [Bacillus amyloliquefaciens strain Fad 108]
ATGAAATTGAAGTATAAATTAGTACTTACTTGCTTAGCTGTAGGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GGAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

70.37

69.231

0.487
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462