Detailed information NTG0932214

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: VXF94_RS12660
• Genome accession: NZ_CP143956
• Coordinates: 2486764..2487909 (-)
• Length: 381 a.a.
• NCBI ID: WP_013353955.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain Fad 108
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2481764..2492909

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VXF94_RS12635 (VXF94_12635)	-	2482058..2482489 (+)	432	WP_013353959.1	hypothetical protein	-
VXF94_RS12640 (VXF94_12640)	-	2482514..2484586 (-)	2073	WP_013353958.1	transglycosylase domain-containing protein	-
VXF94_RS12645 (VXF94_12645)	speE	2484786..2485616 (+)	831	WP_013353957.1	spermidine synthase	-
VXF94_RS12650 (VXF94_12650)	speB	2485675..2486547 (+)	873	WP_013353956.1	agmatinase	-
VXF94_RS12655 (VXF94_12655)	phrF	2486661..2486780 (-)	120	WP_014471166.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
VXF94_RS12660 (VXF94_12660)	rapF	2486764..2487909 (-)	1146	WP_013353955.1	tetratricopeptide repeat protein	Regulator
VXF94_RS12665 (VXF94_12665)	-	2488138..2489532 (+)	1395	WP_014471165.1	YncE family protein	-
VXF94_RS12670 (VXF94_12670)	-	2489538..2489997 (-)	460	Protein_2448	bacteriocin biosynthesis protein AlbG	-
VXF94_RS12675 (VXF94_12675)	-	2490151..2490579 (+)	429	WP_013353951.1	DUF1934 domain-containing protein	-
VXF94_RS12680 (VXF94_12680)	argS	2490576..2492246 (+)	1671	WP_013353950.1	arginine--tRNA ligase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45480.54 Da
• Isoelectric Point: 4.6393

>NTDB_id=932214 VXF94_RS12660 WP_013353955.1 2486764..2487909(-) (rapF) [Bacillus amyloliquefaciens strain Fad 108]
MASVVSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELASLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVTDQIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAKEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLKDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=932214 VXF94_RS12660 WP_013353955.1 2486764..2487909(-) (rapF) [Bacillus amyloliquefaciens strain Fad 108]
GTGGCGAGTGTTGTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAAGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTGGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGCCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAATTGACGTACG
TTACAGATCAGATAGAAAAAGCGGAATTTTACTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGGCTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATCAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTTCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGGCAATATCATGACAAAGGAGTATCTTACGCGAAGG
AGGCGGAAGATTCATTATATATAGCGGAGTATGAATTTTTAGAATCTTTGTACGTCGGTGAGCCTGATGAAGAAGCAATT
ATGGAATGTTTTGACTTCCTCAAGGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
CCACGAGAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAAGTGGAAGAAACAAGACAGCAAATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (189-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	78.215	100	0.782
rapC	Bacillus subtilis subsp. subtilis str. 168	56.842	99.738	0.567