Detailed information NTG0932202

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: VXF94_RS08950
• Genome accession: NZ_CP143956
• Coordinates: 1754583..1755731 (-)
• Length: 382 a.a.
• NCBI ID: WP_013351004.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain Fad 108
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1749583..1760731

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VXF94_RS08920 (VXF94_08920)	-	1749716..1750474 (-)	759	WP_013351009.1	ABC transporter ATP-binding protein	-
VXF94_RS08925 (VXF94_08925)	-	1750468..1751415 (-)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
VXF94_RS08930 (VXF94_08930)	ceuB	1751405..1752358 (-)	954	WP_013351008.1	ABC transporter permease	Machinery gene
VXF94_RS08935 (VXF94_08935)	-	1752772..1754136 (+)	1365	WP_014471434.1	aspartate kinase	-
VXF94_RS08940 (VXF94_08940)	-	1754231..1754332 (+)	102	WP_013351006.1	YjcZ family sporulation protein	-
VXF94_RS08945 (VXF94_08945)	phrC	1754480..1754599 (-)	120	WP_013351005.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
VXF94_RS08950 (VXF94_08950)	rapC	1754583..1755731 (-)	1149	WP_013351004.1	tetratricopeptide repeat protein	Regulator
VXF94_RS08955 (VXF94_08955)	-	1755890..1757317 (-)	1428	WP_161988189.1	sensor histidine kinase	-
VXF94_RS08960 (VXF94_08960)	-	1757304..1757987 (-)	684	WP_013351002.1	response regulator transcription factor	-
VXF94_RS08965 (VXF94_08965)	-	1758200..1759636 (+)	1437	WP_013351001.1	ABC transporter permease	-
VXF94_RS08970 (VXF94_08970)	-	1759651..1760334 (+)	684	WP_014469746.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45545.80 Da
• Isoelectric Point: 5.0674

>NTDB_id=932202 VXF94_RS08950 WP_013351004.1 1754583..1755731(-) (rapC) [Bacillus amyloliquefaciens strain Fad 108]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQNRID
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKDKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=932202 VXF94_RS08950 WP_013351004.1 1754583..1755731(-) (rapC) [Bacillus amyloliquefaciens strain Fad 108]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAGATTAACGAGTGGTACCGATACATAAGAACATTCAGCGT
GCCGGATGCAGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTACTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTATTTGGAGCCGCTGGAGAAATTGAAAATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTCGATAACATAGATAACAGCCAGGCCGGGCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATATCAGCGATCACGTATTATAAACAGGCTGAGAAAAAATTGGCCT
TCGTATCGGACCACGTGGAGCGCGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAATGCTTATGAAATTTACGTAGAGCAGGACACATACAACGTCCGGATCATTCAATGCCATTT
TGTGTTCGGCGTCAATTTAATGGATGAAAGACGTTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGAACCGCATCGAT
GAAGCCATACCGTACTTTGAACGGGCAGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTCCCTCAGGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGATAAAGCATCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTCGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.723	100	0.827
rapF	Bacillus subtilis subsp. subtilis str. 168	57.368	99.476	0.571