Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | JPge_RS13870 | Genome accession | NZ_AP025624 |
| Coordinates | 2753041..2754105 (-) | Length | 354 a.a. |
| NCBI ID | WP_017435101.1 | Uniprot ID | A0A023DES3 |
| Organism | Saccharococcus caldoxylosilyticus strain KH1-6 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2748041..2759105
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JPge_RS13830 (PcaKH16_26930) | - | 2749069..2749860 (+) | 792 | WP_017435173.1 | YqhG family protein | - |
| JPge_RS13835 (PcaKH16_26940) | - | 2749909..2750088 (-) | 180 | WP_017435172.1 | YqzE family protein | - |
| JPge_RS13840 (PcaKH16_26950) | comGG | 2750139..2750531 (-) | 393 | WP_244380194.1 | competence type IV pilus minor pilin ComGG | - |
| JPge_RS13845 (PcaKH16_26960) | comGF | 2750548..2750970 (-) | 423 | WP_017435170.1 | competence type IV pilus minor pilin ComGF | - |
| JPge_RS13850 (PcaKH16_26970) | comGE | 2750967..2751290 (-) | 324 | WP_017435169.1 | competence type IV pilus minor pilin ComGE | - |
| JPge_RS13855 (PcaKH16_26980) | comGD | 2751274..2751711 (-) | 438 | WP_017435168.1 | competence type IV pilus minor pilin ComGD | - |
| JPge_RS13860 (PcaKH16_26990) | comGC | 2751701..2752000 (-) | 300 | WP_042408565.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| JPge_RS13865 (PcaKH16_27000) | comGB | 2752013..2753044 (-) | 1032 | WP_218687286.1 | competence type IV pilus assembly protein ComGB | - |
| JPge_RS13870 (PcaKH16_27010) | comGA | 2753041..2754105 (-) | 1065 | WP_017435101.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| JPge_RS13875 (PcaKH16_27020) | - | 2754307..2755002 (+) | 696 | WP_042406218.1 | helix-turn-helix transcriptional regulator | - |
| JPge_RS13880 (PcaKH16_27030) | - | 2755268..2755510 (+) | 243 | WP_017435099.1 | DUF2626 domain-containing protein | - |
| JPge_RS13885 (PcaKH16_27040) | - | 2755558..2756694 (-) | 1137 | WP_042406222.1 | class I SAM-dependent methyltransferase | - |
| JPge_RS13890 (PcaKH16_27050) | - | 2756918..2757550 (-) | 633 | WP_017435097.1 | MBL fold metallo-hydrolase | - |
| JPge_RS13895 (PcaKH16_27060) | - | 2757997..2758173 (+) | 177 | WP_017435096.1 | DUF2759 domain-containing protein | - |
Sequence
Protein
Download Length: 354 a.a. Molecular weight: 39699.41 Da Isoelectric Point: 8.4019
>NTDB_id=93199 JPge_RS13870 WP_017435101.1 2753041..2754105(-) (comGA) [Saccharococcus caldoxylosilyticus strain KH1-6]
MNEIEYLADRLLMEAGLLRVSDIHIVPRKNDAVVRFRLDGLLMEKATLTKETCERLITHFKFLAGMDIGERRRPQSGAME
TNQQGEIISLRLSTLPTFYDESLVIRLLPQSFFLPQSQISLFAHSTNILLSLFQQPQGLIICTGPTGSGKTTTLYALLRI
CQEKWHRNVITLEDPVEKRIDNLLQVQINEKAGITYAVGLKAALRHDPDVIMVGEIRDAETAKIAVRSAMTGHLIVSTMH
TKNAVGAIYRLREFGIPLEDIEQTLLAVTAQRLVDLLCPFCGEHCMPVCRQYRKVRRVAVHELLYGSALSDAICSVQTGN
KVCRYYTLENIIRKGMALGFLPAHTLTVVKGGEK
MNEIEYLADRLLMEAGLLRVSDIHIVPRKNDAVVRFRLDGLLMEKATLTKETCERLITHFKFLAGMDIGERRRPQSGAME
TNQQGEIISLRLSTLPTFYDESLVIRLLPQSFFLPQSQISLFAHSTNILLSLFQQPQGLIICTGPTGSGKTTTLYALLRI
CQEKWHRNVITLEDPVEKRIDNLLQVQINEKAGITYAVGLKAALRHDPDVIMVGEIRDAETAKIAVRSAMTGHLIVSTMH
TKNAVGAIYRLREFGIPLEDIEQTLLAVTAQRLVDLLCPFCGEHCMPVCRQYRKVRRVAVHELLYGSALSDAICSVQTGN
KVCRYYTLENIIRKGMALGFLPAHTLTVVKGGEK
Nucleotide
Download Length: 1065 bp
>NTDB_id=93199 JPge_RS13870 WP_017435101.1 2753041..2754105(-) (comGA) [Saccharococcus caldoxylosilyticus strain KH1-6]
ATGAATGAGATTGAATATTTGGCGGACCGTCTTCTCATGGAAGCAGGGTTGCTTCGCGTCTCGGATATTCATATCGTTCC
GCGGAAGAACGATGCGGTAGTGCGTTTTCGCTTAGATGGACTGCTGATGGAAAAAGCAACGCTGACAAAAGAAACATGCG
AGCGGCTTATTACCCATTTTAAATTTTTAGCAGGCATGGACATTGGCGAACGCCGTCGGCCGCAAAGCGGAGCAATGGAG
ACAAACCAGCAAGGGGAAATCATTTCTTTACGCCTTTCCACATTGCCGACATTCTACGATGAAAGCCTCGTCATCCGGCT
TCTTCCACAAAGTTTTTTCCTGCCACAGTCACAAATTTCCCTATTTGCCCACTCTACCAACATATTGCTTTCCCTGTTTC
AACAGCCGCAAGGATTAATCATTTGTACCGGACCGACCGGATCGGGAAAAACGACGACTTTATATGCCTTGCTGCGGATT
TGCCAGGAAAAGTGGCATCGCAATGTCATCACCTTGGAAGATCCGGTCGAAAAGCGGATTGACAATCTATTGCAAGTGCA
GATTAACGAAAAAGCGGGAATTACGTATGCGGTTGGCTTGAAAGCCGCGTTGCGCCATGATCCGGATGTTATTATGGTCG
GGGAAATCCGCGATGCCGAAACGGCAAAAATTGCGGTGCGCTCTGCCATGACAGGACATTTGATCGTTTCGACGATGCAT
ACGAAAAATGCGGTTGGCGCGATTTACCGTTTGCGCGAATTCGGCATTCCGCTCGAAGATATTGAGCAAACGTTGCTCGC
CGTAACGGCGCAGCGGCTTGTTGATTTGCTCTGTCCGTTTTGCGGTGAACATTGCATGCCCGTTTGCCGCCAATATCGAA
AAGTACGCCGCGTCGCTGTGCATGAACTGCTGTATGGAAGTGCATTATCCGACGCTATTTGCTCCGTGCAAACAGGGAAC
AAAGTATGCCGTTACTATACGTTGGAAAATATCATTCGCAAAGGGATGGCGCTTGGGTTTTTGCCGGCGCACACTCTCAC
GGTCGTTAAGGGAGGGGAAAAATGA
ATGAATGAGATTGAATATTTGGCGGACCGTCTTCTCATGGAAGCAGGGTTGCTTCGCGTCTCGGATATTCATATCGTTCC
GCGGAAGAACGATGCGGTAGTGCGTTTTCGCTTAGATGGACTGCTGATGGAAAAAGCAACGCTGACAAAAGAAACATGCG
AGCGGCTTATTACCCATTTTAAATTTTTAGCAGGCATGGACATTGGCGAACGCCGTCGGCCGCAAAGCGGAGCAATGGAG
ACAAACCAGCAAGGGGAAATCATTTCTTTACGCCTTTCCACATTGCCGACATTCTACGATGAAAGCCTCGTCATCCGGCT
TCTTCCACAAAGTTTTTTCCTGCCACAGTCACAAATTTCCCTATTTGCCCACTCTACCAACATATTGCTTTCCCTGTTTC
AACAGCCGCAAGGATTAATCATTTGTACCGGACCGACCGGATCGGGAAAAACGACGACTTTATATGCCTTGCTGCGGATT
TGCCAGGAAAAGTGGCATCGCAATGTCATCACCTTGGAAGATCCGGTCGAAAAGCGGATTGACAATCTATTGCAAGTGCA
GATTAACGAAAAAGCGGGAATTACGTATGCGGTTGGCTTGAAAGCCGCGTTGCGCCATGATCCGGATGTTATTATGGTCG
GGGAAATCCGCGATGCCGAAACGGCAAAAATTGCGGTGCGCTCTGCCATGACAGGACATTTGATCGTTTCGACGATGCAT
ACGAAAAATGCGGTTGGCGCGATTTACCGTTTGCGCGAATTCGGCATTCCGCTCGAAGATATTGAGCAAACGTTGCTCGC
CGTAACGGCGCAGCGGCTTGTTGATTTGCTCTGTCCGTTTTGCGGTGAACATTGCATGCCCGTTTGCCGCCAATATCGAA
AAGTACGCCGCGTCGCTGTGCATGAACTGCTGTATGGAAGTGCATTATCCGACGCTATTTGCTCCGTGCAAACAGGGAAC
AAAGTATGCCGTTACTATACGTTGGAAAATATCATTCGCAAAGGGATGGCGCTTGGGTTTTTGCCGGCGCACACTCTCAC
GGTCGTTAAGGGAGGGGAAAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
54.971 |
96.61 |
0.531 |
| pilB | Glaesserella parasuis strain SC1401 |
43.729 |
83.333 |
0.364 |