Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | JPge_RS13860 | Genome accession | NZ_AP025624 |
| Coordinates | 2751701..2752000 (-) | Length | 99 a.a. |
| NCBI ID | WP_042408565.1 | Uniprot ID | A0A023DDZ7 |
| Organism | Saccharococcus caldoxylosilyticus strain KH1-6 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2746701..2757000
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JPge_RS13825 (PcaKH16_26920) | - | 2747412..2749082 (+) | 1671 | WP_033313715.1 | DEAD/DEAH box helicase | - |
| JPge_RS13830 (PcaKH16_26930) | - | 2749069..2749860 (+) | 792 | WP_017435173.1 | YqhG family protein | - |
| JPge_RS13835 (PcaKH16_26940) | - | 2749909..2750088 (-) | 180 | WP_017435172.1 | YqzE family protein | - |
| JPge_RS13840 (PcaKH16_26950) | comGG | 2750139..2750531 (-) | 393 | WP_244380194.1 | competence type IV pilus minor pilin ComGG | - |
| JPge_RS13845 (PcaKH16_26960) | comGF | 2750548..2750970 (-) | 423 | WP_017435170.1 | competence type IV pilus minor pilin ComGF | - |
| JPge_RS13850 (PcaKH16_26970) | comGE | 2750967..2751290 (-) | 324 | WP_017435169.1 | competence type IV pilus minor pilin ComGE | - |
| JPge_RS13855 (PcaKH16_26980) | comGD | 2751274..2751711 (-) | 438 | WP_017435168.1 | competence type IV pilus minor pilin ComGD | - |
| JPge_RS13860 (PcaKH16_26990) | comGC | 2751701..2752000 (-) | 300 | WP_042408565.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| JPge_RS13865 (PcaKH16_27000) | comGB | 2752013..2753044 (-) | 1032 | WP_218687286.1 | competence type IV pilus assembly protein ComGB | - |
| JPge_RS13870 (PcaKH16_27010) | comGA | 2753041..2754105 (-) | 1065 | WP_017435101.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| JPge_RS13875 (PcaKH16_27020) | - | 2754307..2755002 (+) | 696 | WP_042406218.1 | helix-turn-helix transcriptional regulator | - |
| JPge_RS13880 (PcaKH16_27030) | - | 2755268..2755510 (+) | 243 | WP_017435099.1 | DUF2626 domain-containing protein | - |
| JPge_RS13885 (PcaKH16_27040) | - | 2755558..2756694 (-) | 1137 | WP_042406222.1 | class I SAM-dependent methyltransferase | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 10876.69 Da Isoelectric Point: 6.4487
>NTDB_id=93198 JPge_RS13860 WP_042408565.1 2751701..2752000(-) (comGC) [Saccharococcus caldoxylosilyticus strain KH1-6]
MKNEKGFTLIEMLIVLMVISVLLLIVIPNITKHNGMINNKGCAAFVNTVQAQVKAYEMENNKIPTVQELIDGKYIKSDKC
PNGHSIQINSDGEVSESGT
MKNEKGFTLIEMLIVLMVISVLLLIVIPNITKHNGMINNKGCAAFVNTVQAQVKAYEMENNKIPTVQELIDGKYIKSDKC
PNGHSIQINSDGEVSESGT
Nucleotide
Download Length: 300 bp
>NTDB_id=93198 JPge_RS13860 WP_042408565.1 2751701..2752000(-) (comGC) [Saccharococcus caldoxylosilyticus strain KH1-6]
ATGAAGAATGAAAAGGGGTTTACGTTAATTGAAATGCTAATCGTATTAATGGTTATTTCTGTCTTATTGTTGATTGTCAT
TCCAAATATAACCAAACATAACGGAATGATTAACAATAAAGGATGCGCGGCGTTTGTCAATACCGTCCAAGCGCAGGTTA
AGGCTTATGAGATGGAGAATAACAAAATTCCTACTGTACAGGAGCTGATCGATGGAAAGTACATTAAGTCGGATAAATGC
CCAAACGGCCACTCCATTCAAATTAATAGCGACGGGGAAGTAAGCGAAAGTGGAACGTGA
ATGAAGAATGAAAAGGGGTTTACGTTAATTGAAATGCTAATCGTATTAATGGTTATTTCTGTCTTATTGTTGATTGTCAT
TCCAAATATAACCAAACATAACGGAATGATTAACAATAAAGGATGCGCGGCGTTTGTCAATACCGTCCAAGCGCAGGTTA
AGGCTTATGAGATGGAGAATAACAAAATTCCTACTGTACAGGAGCTGATCGATGGAAAGTACATTAAGTCGGATAAATGC
CCAAACGGCCACTCCATTCAAATTAATAGCGACGGGGAAGTAAGCGAAAGTGGAACGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
53.191 |
94.949 |
0.505 |
| comGC | Staphylococcus aureus MW2 |
42.268 |
97.98 |
0.414 |
| comGC | Staphylococcus aureus N315 |
42.268 |
97.98 |
0.414 |