Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JPge_RS13615 Genome accession   NZ_AP025624
Coordinates   2707947..2709668 (-) Length   573 a.a.
NCBI ID   WP_042408507.1    Uniprot ID   A0A023DDV9
Organism   Saccharococcus caldoxylosilyticus strain KH1-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2702947..2714668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JPge_RS13590 (PcaKH16_26430) - 2703262..2703510 (+) 249 WP_026078465.1 DUF2627 domain-containing protein -
  JPge_RS13595 (PcaKH16_26440) - 2703521..2704249 (-) 729 WP_042408501.1 glycerophosphodiester phosphodiesterase -
  JPge_RS13600 (PcaKH16_26450) - 2704353..2704499 (+) 147 WP_070104534.1 YycC family protein -
  JPge_RS13605 (PcaKH16_26460) spo0A 2705443..2706222 (-) 780 WP_017435222.1 sporulation transcription factor Spo0A -
  JPge_RS13610 (PcaKH16_26470) spoIVB 2706529..2707821 (-) 1293 WP_042408504.1 SpoIVB peptidase -
  JPge_RS13615 (PcaKH16_26480) recN 2707947..2709668 (-) 1722 WP_042408507.1 DNA repair protein RecN Machinery gene
  JPge_RS13620 (PcaKH16_26490) ahrC 2709688..2710137 (-) 450 WP_017435219.1 transcriptional regulator AhrC/ArgR -
  JPge_RS13625 (PcaKH16_26500) - 2710205..2711038 (-) 834 WP_042408509.1 TlyA family RNA methyltransferase -
  JPge_RS13630 (PcaKH16_26510) dxs 2711042..2712934 (-) 1893 WP_042408512.1 1-deoxy-D-xylulose-5-phosphate synthase -
  JPge_RS13635 (PcaKH16_26520) - 2713147..2714031 (-) 885 WP_174407481.1 polyprenyl synthetase family protein -
  JPge_RS13640 (PcaKH16_26530) - 2714044..2714277 (-) 234 WP_017435215.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64876.49 Da        Isoelectric Point: 4.8542

>NTDB_id=93197 JPge_RS13615 WP_042408507.1 2707947..2709668(-) (recN) [Saccharococcus caldoxylosilyticus strain KH1-6]
MLAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIYLLIGGRGSAEFVRYGEEKAEIEGLFLLNDETHPCYGK
CAEVGIDISEGMVVLRREIFATGKSVCRVNGKLVTTAVLREIGSTLVDIHGQHEHQELMDPARHLPLLDEFGGAEIAEAL
AEYRSVYEKYEQLRKKLKKLNENEQQMAHRLDLLTFQLNEIQQANLQPNEDEQLMEEKVKIVNFQKIYEALKHSYEALSG
EQRGLDWIGLAMSHLDDVASIDPELKEVYETIANSYYLLEDIMYKLRDQLEQLEYDPYRLDLIESRLGEINQLKRKYGPT
IEEILQYAEKISEEIDTIRNREIHVDELQKELKSVTEDLLIEAKNVTNVRKKYAKMLIDRIHQELKDLYMEKTQFDIVFA
KREGPLDAPLLDGVPVKFHEDGVDVVEFYISTNVGEPLKPLAKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRISIDSQVLCISHLPQVAAMADTHLFIAKETDGTRTKTLVKALTEEEKVKEIGRMISGVEITELTKKH
AKELLELATKIKQ

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=93197 JPge_RS13615 WP_042408507.1 2707947..2709668(-) (recN) [Saccharococcus caldoxylosilyticus strain KH1-6]
TTGCTTGCGGAATTATCCATAAAAAATTTCGCCATTATCGAATCGCTGTCGATTTCGTTTGAGAAAGGGCTAACAGTATT
AACAGGGGAAACGGGAGCAGGAAAATCGATTATTATTGATGCCATTTATTTGCTGATTGGCGGCCGCGGTTCCGCAGAAT
TTGTCCGTTATGGAGAAGAAAAGGCGGAAATAGAGGGACTTTTTTTATTAAACGATGAAACTCATCCGTGTTATGGCAAA
TGCGCCGAAGTCGGCATCGATATTAGCGAGGGAATGGTCGTGCTACGCCGCGAAATTTTCGCGACCGGAAAAAGCGTATG
CCGCGTAAACGGAAAATTAGTAACGACAGCGGTATTGCGGGAGATTGGTTCGACGCTCGTTGATATTCACGGGCAGCATG
AACATCAAGAATTGATGGATCCGGCCCGGCATCTTCCGCTACTGGATGAATTCGGGGGAGCGGAAATTGCAGAAGCGCTT
GCCGAATACCGCTCGGTTTATGAGAAATATGAACAATTGCGGAAGAAGCTGAAAAAATTAAATGAAAATGAACAGCAAAT
GGCCCATCGACTTGATTTGTTGACGTTCCAGCTTAATGAAATTCAGCAGGCGAATTTGCAGCCAAATGAAGACGAACAAT
TGATGGAGGAAAAAGTAAAAATCGTTAATTTCCAAAAAATTTACGAAGCCTTGAAACATAGCTATGAAGCGCTGTCTGGC
GAGCAGCGCGGCCTCGATTGGATAGGGCTGGCGATGAGCCATTTAGACGATGTTGCTTCCATTGATCCGGAGCTAAAGGA
AGTGTATGAAACGATCGCCAATAGCTATTATTTATTAGAAGACATCATGTATAAATTGCGCGATCAACTTGAACAATTAG
AATATGATCCATACCGTCTCGACCTCATCGAAAGCCGCCTAGGCGAGATTAATCAATTAAAACGAAAATACGGCCCGACG
ATTGAAGAAATTTTGCAATACGCGGAAAAAATTAGCGAAGAAATTGATACGATTCGAAACCGGGAAATCCATGTTGATGA
GTTGCAGAAAGAACTAAAATCGGTGACGGAAGATTTATTAATTGAAGCAAAAAACGTAACCAATGTCCGCAAAAAATATG
CAAAAATGTTAATCGACCGTATCCATCAGGAACTAAAAGATCTATATATGGAAAAAACGCAGTTTGACATCGTATTTGCC
AAGCGGGAAGGGCCGCTCGATGCGCCGCTTTTGGACGGGGTGCCCGTCAAGTTCCATGAAGACGGCGTGGATGTGGTCGA
ATTTTATATTTCCACCAATGTCGGCGAACCACTTAAACCGCTTGCCAAAATTGCTTCCGGCGGTGAGCTGTCGCGCATCA
TGCTGGCGCTAAAAAGCATTTTCTCGAAACACCAGGGGGTTACATCGATCATTTTTGATGAAGTGGATACAGGCGTCAGC
GGCCGTGTGGCTCAAGCGATTGCCGAAAAGATTTACCGCATTTCCATCGATTCGCAAGTGCTCTGCATTTCCCACTTGCC
GCAAGTAGCAGCAATGGCAGATACGCATCTGTTTATCGCAAAAGAAACGGACGGAACCCGAACGAAAACGCTTGTGAAAG
CATTGACAGAGGAAGAAAAAGTAAAAGAAATTGGGCGGATGATTTCCGGTGTGGAAATTACGGAGCTGACAAAAAAACAT
GCAAAAGAATTGCTTGAGCTAGCAACAAAAATCAAACAATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A023DDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

64.46

100

0.646

Multiple sequence alignment