Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   V3C05_RS10800 Genome accession   NZ_CP143878
Coordinates   2204987..2205532 (+) Length   181 a.a.
NCBI ID   WP_010907447.1    Uniprot ID   -
Organism   Pasteurella multocida subsp. multocida strain LH06     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2199987..2210532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C05_RS10790 (V3C05_10790) - 2201218..2203584 (+) 2367 WP_010907445.1 tetratricopeptide repeat protein -
  V3C05_RS10795 (V3C05_10795) - 2203764..2204948 (+) 1185 WP_330962069.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  V3C05_RS10800 (V3C05_10800) pilF/pilF2 2204987..2205532 (+) 546 WP_010907447.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  V3C05_RS10805 (V3C05_10805) - 2205655..2206611 (+) 957 WP_005725132.1 helix-turn-helix domain-containing protein -
  V3C05_RS10810 (V3C05_10810) ispG 2206638..2207741 (+) 1104 WP_005719572.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  V3C05_RS10815 (V3C05_10815) hisS 2207771..2209042 (+) 1272 WP_010907448.1 histidine--tRNA ligase -
  V3C05_RS10820 (V3C05_10820) - 2209061..2209672 (+) 612 WP_005725137.1 YfgM family protein -
  V3C05_RS10825 (V3C05_10825) - 2209877..2210314 (+) 438 WP_010907449.1 methyltransferase family protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20911.47 Da        Isoelectric Point: 7.8913

>NTDB_id=931659 V3C05_RS10800 WP_010907447.1 2204987..2205532(+) (pilF/pilF2) [Pasteurella multocida subsp. multocida strain LH06]
MTRVFQVWIASIFSLFLSACVSQEGNKTFDSHEAAKARIELGLGYLSQHDFARAKQNFDKALSHAPNYYLSHAVLAYLYQ
KQGHLDLARHAYEKAIKLDKNQGDVLNNYGAFLCQQGEFEQAYKQFSQALNAPHYYQHADTYENLVWCASFAKDTVRYQQ
NLQHLTQFDPNRAKKFPPHIE

Nucleotide


Download         Length: 546 bp        

>NTDB_id=931659 V3C05_RS10800 WP_010907447.1 2204987..2205532(+) (pilF/pilF2) [Pasteurella multocida subsp. multocida strain LH06]
ATGACGCGCGTTTTTCAAGTATGGATAGCAAGCATTTTTTCTCTTTTTCTTTCTGCCTGTGTGAGTCAAGAAGGTAACAA
AACGTTTGATTCACATGAGGCAGCAAAAGCCAGAATTGAATTAGGTTTAGGCTATTTATCTCAGCATGATTTTGCGCGAG
CAAAGCAAAATTTTGATAAAGCTTTATCCCATGCCCCAAATTACTATTTATCTCATGCGGTCTTAGCGTATCTCTACCAA
AAACAAGGTCATCTTGATTTAGCCCGTCACGCTTATGAAAAGGCGATAAAATTAGATAAAAATCAAGGCGATGTATTAAA
TAATTATGGTGCCTTTTTATGCCAACAAGGTGAGTTTGAACAAGCTTACAAACAATTTTCTCAAGCATTAAATGCCCCAC
ATTATTATCAACACGCCGATACTTATGAAAATTTAGTTTGGTGTGCGTCTTTTGCCAAAGACACTGTCCGTTATCAACAA
AATTTGCAACATTTAACGCAGTTTGATCCCAATAGAGCAAAAAAATTTCCGCCACATATTGAGTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_17)

(91-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

50

97.238

0.486
  pilF Glaesserella parasuis strain SC1401

43.85

100

0.453